| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 284281 = | 40 (0.920) | 3 (0.070) | 3/226 | 3.4 | 7.4% | coding (593/759 nt) | xynR | DNA‑binding transcriptional repressor XynR |
| ? | NZ_CP009273 | 284315 = | 38 (0.940) | coding (559/759 nt) | xynR | DNA‑binding transcriptional repressor XynR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCGAGCTGAACGCCCTGCTGGAGGGCTATCAGTACACTACCTTTACGCCCGCCACCCTCGCGTCTCGCGAAGCCTTAATGAGCGCCCTGGCGCAGACCCGCGAGCAAGGCTACGCCCTGGACAGCGAAGAGAACGAGCAGGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/284426‑284281‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagggcgtAGCCTTGCTCGCGGGTCTGCGCCAGGGCGCTCATTAAGGCTTCGCGAGACGCGAGGGTGGCGGGCGTAAAGGTAGTGTACTGATAGCCCTCCAGCAGGGCGTTCAGCTCGGCCTCGCCCAGCCAGGCAATCAACACC > NZ_CP009273/284315‑284451 GCCGAGCTGAACGCCCTGCTGGAGGGCTATCAGTACACTACCTTTACGCCCGCCACCCTCGCGTCTCGCGAAGCCTTAATGAGCGCCCTGGCGCAGACCCGCGAGCAAGGCTACGCCCTGGACAGCGAAGAGAACGAGC < 1:418698/139‑1GCCGAGCTGAACGCCCTGCTGGAGGGCTATCAGTACACTACCTTTACGCCCGCCACCCTCGCGTCTCGCGAAGCCTTAATGAGCGCCCTGGCGCAGACCCGCGAGCAAGGCTACGCCCTGGACAGCGAAGAGAACGAGC < 1:744835/139‑1 GGGCTATCAGTACACTACCTTTACGCCCGCCACCCTCGCGTCTCGCGAAGCCTTAATGAGCGCCCTGGCGCAGACCCGCGAGCAAGGCTACGCCCTGGACAGCGAAGAGAACGAGCAGGGCGTAGCCTTGCTCGCGGGT < 1:489529/139‑1 TTACGCCCGCCACCCTCGCGTCTCGCGAAGCCTTAATGAGCGCCCTGGCGCAGACCCGCGAGCAAGGCTACGCCCTGGACAGCGAAGAGAACGAGCAGGGCGTAGCCTTGCTCGCGGGTCTGCGCCAGGGCG < 1:288792/132‑1 TTACGCCCGCCACCCTCGCGTCTCGCGAAGCCTTAATGAGCGCCCTGGCGCAGACCCGCGAGCAAGGCTACGCCCTGGACAGCGAAGAGAACGAGCAGGGCGTAGCCTTGCTCGCGGGTCTGCGCCAGGGCG > 2:288792/1‑132 GGCGTAGCCTTGCTCGCGGGTCTGCGCCAGGGCGCTCATTAAGGCTTCGCGAGACGCGAGGGTGGCGGGCGTAAAGGTAGTGTACTGATAGCCCTCCAGCAGGGCGTTCAGCTCGGCCTCGCCCAGCCAGGCAATCAA > 2:504881/1‑138 GGCGTAGCCTTGCTCGCGGGTCTGCGCCAGGGCGCTCATTAAGGCTTCGCGAGACGCGAGGGTGGCG > 1:52795/1‑67 GGCGTAGCCTTGCTCGCGGGTCTGCGCCAGGGCGCTCATTAAGGCTTCGCGAGACGCGAGGGTGGCG < 2:52795/67‑1 GTAGCCTTGCTCGCGGGTCTGCGCCAGGGCGCTCATTAAGGCTTCGCGAGACGCGAGGGTGGCGGGCGTAAAGGTAGTGTACTGATAGCCCTCCAGCAGGGCGTTCAGCTCGGCCTCGCCCAGCCAGGCAATCAACACC < 1:854584/139‑1 GTAGCCTTGCTCGCGGGTCTGCGCCAGGGCGCTCATTAAGGCTTCGCGAGACGCGAGGGTGGCGGGCGTAAAGGTAGTGTACTGATAGCCCTCCAGCAGGGCGTTCAGCTCGGCCTCGCCCAGCCAGGCAATCAACACC < 2:829466/139‑1 GCCGAGCTGAACGCCCTGCTGGAGGGCTATCAGTACACTACCTTTACGCCCGCCACCCTCGCGTCTCGCGAAGCCTTAATGAGCGCCCTGGCGCAGACCCGCGAGCAAGGCTACGCCCTGGACAGCGAAGAGAACGAGCAGGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/284426‑284281‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagggcgtAGCCTTGCTCGCGGGTCTGCGCCAGGGCGCTCATTAAGGCTTCGCGAGACGCGAGGGTGGCGGGCGTAAAGGTAGTGTACTGATAGCCCTCCAGCAGGGCGTTCAGCTCGGCCTCGCCCAGCCAGGCAATCAACACC > NZ_CP009273/284315‑284451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |