| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,597,498 | G→T | A75S (GCG→TCG) | lsrC → | autoinducer 2 ABC transporter permease LsrC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,597,498 | 0 | G | T | 100.0% | 69.0 / NA | 18 | A75S (GCG→TCG) | lsrC | autoinducer 2 ABC transporter permease LsrC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (8/10); total (8/10) | |||||||||||
CCAGTATTTAAGTGTGCAAACGCTGACCATGGTTTATAGCAGCGCGCAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCGCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACGGTGTCCTGGTCGCGTGGCTAAAGATCCCTGCCA > NZ_CP009273/1597362‑1597627 | ccAGTATTTAAGTGTGCAAACGCTGACCATGGTTTATAGCAGCGCGCAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGctcg > 2:274824/1‑139 (MQ=255) aCCATGGTTTATAGCAGCGCGCAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACg < 1:274824/139‑1 (MQ=255) aCCATGGTTTATAGCAGCGCGCAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACg > 2:200194/1‑139 (MQ=255) cgcgcAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTgcg < 1:693371/95‑1 (MQ=255) cgcgcAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTgcg > 2:693371/1‑95 (MQ=255) cgcgcAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGc < 1:451787/101‑1 (MQ=255) cgcgcAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGc > 2:451787/1‑101 (MQ=255) cgcgcAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCt > 2:81392/1‑139 (MQ=255) cgcgcAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCt > 2:561632/1‑139 (MQ=255) cgcAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGt > 2:817944/1‑139 (MQ=255) aTGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGa < 1:200194/138‑1 (MQ=255) cgcgCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCaa > 1:81073/1‑139 (MQ=255) cgcgCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCaa < 1:817944/139‑1 (MQ=255) cgcAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACg < 1:831272/139‑1 (MQ=255) cgcAATATTGATGTTTCAGTGGGTGCGATTACCGGAATGTGCTCTGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCTGTACCTGTTGCTTGTGTCGCGGTTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACg < 1:831250/139‑1 (MQ=255) aaTATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACGgtg > 1:242578/1‑139 (MQ=255) tCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAgg < 2:689436/59‑1 (MQ=255) tCAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAgg > 1:689436/1‑59 (MQ=255) cAGTGGGTTCGATTACCGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACGGTGTCCTGGTCGCGt < 2:298830/138‑1 (MQ=255) ccGGAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACGGTGTCCTGGTCGCGTGGCTAAAGATCCCTg < 1:81392/138‑1 (MQ=255) ggAATGTGCTCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACGGTGTCCTGGTCGCGTGGCTAAAGATCCCTGCCa < 2:242578/139‑1 (MQ=255) | CCAGTATTTAAGTGTGCAAACGCTGACCATGGTTTATAGCAGCGCGCAAATCCTGATCCTGCTGGCAATGGGCGCGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCGCGGTGCTGTTGGGGATGTTACTGAACGCAGGATATTCACTACCTGTTGCTTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACGGTGTCCTGGTCGCGTGGCTAAAGATCCCTGCCA > NZ_CP009273/1597362‑1597627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |