Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 1,701,793 A→C P206P (CCA→CCC)  rsxC → electron transport complex subunit RsxC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,701,7930AC94.1% 111.1 / 0.4 34P206P (CCA→CCC) rsxCelectron transport complex subunit RsxC
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base C (16/16);  total (17/17)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.90e-01

AAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATT  >  NZ_CP009273/1701665‑1701927
                                                                                                                                |                                                                                                                                      
aaGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTc                                                                                                                              >  1:175308/1‑139 (MQ=255)
    ttGAACCGTTGATTATAAAGGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTAt                                                                                                                          <  2:642041/139‑1 (MQ=255)
           gTTGATAATCAACGCGGCTGGGTGCGGCCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCAtt                                                                                                                   <  2:193376/139‑1 (MQ=255)
              gATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGa                                                                                                                 <  1:552451/138‑1 (MQ=255)
              gATTACCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGa                                                                                                                 <  1:543791/138‑1 (MQ=255)
                               tgTGCGAGCCTTCCTTTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGc                                                                                               <  2:296095/138‑1 (MQ=255)
                                               tACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgc                                                                               >  1:300823/1‑139 (MQ=255)
                                                    ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTAt                                                                                                                          >  2:113141/1‑91 (MQ=255)
                                                    ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTAt                                                                                                                          <  1:113141/91‑1 (MQ=255)
                                                    ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                                                                                                      >  2:632886/1‑79 (MQ=255)
                                                    ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                                                                                                      <  1:632886/79‑1 (MQ=255)
                                                          aCCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGc                                                                    <  2:300823/139‑1 (MQ=255)
                                                             gTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                              >  1:191830/1‑126 (MQ=255)
                                                             gTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                              <  2:191830/126‑1 (MQ=255)
                                                                        gATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTTCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAtgct                                                                                   >  2:113836/1‑110 (MQ=255)
                                                                        gATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGa                                                                                             >  2:710669/1‑100 (MQ=255)
                                                                        gATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGa                                                                                             <  1:710669/100‑1 (MQ=255)
                                                                        gATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAtgct                                                                                   <  1:113836/110‑1 (MQ=255)
                                                                        gATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGata                                                      >  1:828364/1‑139 (MQ=255)
                                                                             cgcgGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTtct                                                 >  2:530746/1‑139 (MQ=255)
                                                                             cgcgGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTtct                                                 >  2:602774/1‑139 (MQ=255)
                                                                             cgcgGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTtct                                                 >  1:144899/1‑139 (MQ=255)
                                                                                  cTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCg                                            >  2:816012/1‑139 (MQ=255)
                                                                                        tCGTAGAGGGTAGTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGAt                                      <  2:725741/139‑1 (MQ=255)
                                                                                            agagGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                              >  2:25341/1‑95 (MQ=255)
                                                                                            agagGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTgcgcg                                                                              <  1:25341/95‑1 (MQ=255)
                                                                                             gagGGTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTcca                                  <  1:226762/138‑1 (MQ=255)
                                                                                                 gTATTCGCATTCTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTccaacca                              >  1:794267/1‑138 (MQ=255)
                                                                                                            cTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCg                                                                   >  2:277746/1‑90 (MQ=255)
                                                                                                            cTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCg                                                                   <  1:277746/90‑1 (MQ=255)
                                                                                                            cTTGCGCATATTCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTg                  >  2:669006/1‑139 (MQ=255)
                                                                                                                      ttCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTa         <  1:816012/138‑1 (MQ=255)
                                                                                                                       tCTGCAGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTaaa       >  1:193761/1‑139 (MQ=255)
                                                                                                                            aGCCCCGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAAtt  <  1:669006/139‑1 (MQ=255)
                                                                                                                                |                                                                                                                                      
AAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATT  >  NZ_CP009273/1701665‑1701927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑