Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 2,179,484 | A→G | E30G (GAA→GGA) | rcnA → | nickel/cobalt efflux protein RcnA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 2,179,484 | 0 | A | G | 96.8% | 103.4 / NA | 31 | E30G (GAA→GGA) | rcnA | nickel/cobalt efflux protein RcnA |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (14/16); minor base T (0/1); total (14/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGAACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGTCTGGTTAATTGCCTTTGGCGGGA > NZ_CP009273/2179354‑2179618 | gAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAggg > 2:100957/1‑138 (MQ=255) tAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACt < 2:292119/139‑1 (MQ=255) aGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAAc < 1:100957/139‑1 (MQ=255) gATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAAc > 1:572913/1‑138 (MQ=255) aTTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACga > 1:268145/1‑139 (MQ=255) ttGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAggg > 1:654309/1‑125 (MQ=255) ttGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAggg < 2:654309/125‑1 (MQ=255) ttGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACgat < 2:268145/139‑1 (MQ=255) aGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTatca > 1:715671/1‑139 (MQ=255) aTGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAg > 2:729965/1‑139 (MQ=255) aTGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAg > 1:850172/1‑139 (MQ=255) cttcttCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATggcg < 1:58528/99‑1 (MQ=255) cttcttCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATggcg > 2:58528/1‑99 (MQ=255) cttcAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGt < 2:41969/137‑1 (MQ=255) cAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGc > 1:605908/1‑139 (MQ=255) gTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACt < 2:605908/139‑1 (MQ=255) ccAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCaa > 2:184142/1‑126 (MQ=255) ccAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCaa < 1:184142/126‑1 (MQ=255) aGCGCCACCTTACTTGGTGCGCTTCCTGGCCTGGGACCAGGGCACTCAAAAACGATGATGCCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCAGTGATGATCGGACTATCCGCAACTCTTTCGCCTCCCg > 2:812560/1‑139 (MQ=255) cgcCATCTTACTTGGTGCGCTTCATGGCCTGGTACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCa < 2:708380/139‑1 (MQ=255) gcCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAg < 1:106620/139‑1 (MQ=255) tCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGt > 1:61006/1‑139 (MQ=255) tCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGt > 1:472281/1‑139 (MQ=255) aCTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGt < 2:329192/135‑1 (MQ=255) cTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGTCTGGt < 2:715671/139‑1 (MQ=255) gTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGTCTGGTTaa < 2:259622/138‑1 (MQ=255) tGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGt > 2:192015/1‑129 (MQ=255) tGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGt < 1:192015/129‑1 (MQ=255) cgcTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGTCTGGTTAATTg < 2:650577/138‑1 (MQ=255) cTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGTCTGGTTAATTGCCTTTGGCGGGa < 1:69664/139‑1 (MQ=255) cTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGTCTGGTTAATTGCCTTTGGCGGGa < 2:83612/139‑1 (MQ=255) | GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGAACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGCAGCAACTATTTCGCATACCGCAGTGGTCTGGTTAATTGCCTTTGGCGGGA > NZ_CP009273/2179354‑2179618 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |