| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,258,402 | T→A | I354N (ATC→AAC) | setB → | sugar efflux transporter SetB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,258,402 | 0 | T | A | 100.0% | 78.3 / NA | 20 | I354N (ATC→AAC) | setB | sugar efflux transporter SetB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (12/8); total (12/8) | |||||||||||
GCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGATGTTTAAGG > NZ_CP009273/2258270‑2258525 | gCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGc < 1:845066/139‑1 (MQ=255) tttttATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGc < 1:458834/118‑1 (MQ=255) tttttATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGc > 2:458834/1‑118 (MQ=255) ggCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCCTCGTCGCCcag > 1:139119/1‑138 (MQ=255) ggCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATAGCCGCCgcga > 2:283811/1‑139 (MQ=255) ggcATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATc < 1:492985/139‑1 (MQ=255) gggATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCt < 1:726833/138‑1 (MQ=255) tGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGtt < 2:754379/139‑1 (MQ=255) aTCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATTGTCGCCGGGGTCTTGGATTATCACGCCGTGTTTTGGGTTGCGGTggg > 2:735185/1‑138 (MQ=255) cacGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGCGATCTGGAATTAACACGCTGTGTTTTTGTTTTCGGTGGTGATGATTATCTCCCCTCTGTTTTGTTTACTg > 2:642040/1‑139 (MQ=255) cacGCTCTATACCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTg < 2:39129/139‑1 (MQ=255) taCCAACACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTaaa < 2:211186/139‑1 (MQ=255) aaCACTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGGGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGATg > 1:618688/1‑139 (MQ=255) acacTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTAATGCGGATTAAAGATGt > 1:27362/1‑139 (MQ=255) cTTCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGGATTATTACGCTGTGTTTTGGTTTGCGGTGGGGGTGATTATCCCCACTCTGTTTTTCTTTCTGCGGGTTAAAAATGttt > 2:778017/1‑138 (MQ=255) tCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCaa > 2:614130/1‑40 (MQ=255) tCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCAt < 1:614130/41‑1 (MQ=255) tCGCGCGTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGGGATCTGGAATTTTTACGCTGTGTTCTGGTTTTTGGTGGGGATGATTATCGCCACTCTGTTTTTCTTACTGCGGGTTAAAGATGTTTAAg > 2:437929/1‑139 (MQ=255) cgcgcgTGGGCTGGAACATCGCAGGATCAGTGGCGGGCCTCGCCGCCGCGGTCTGGGATTATCACGCTGTGTTCTGGTTTGCGATGGCGGTGGTTATCGCCCCTCTGTTTTTCTTACTGTGGGTTAAAGATGTTTAAgg > 2:54557/1‑139 (MQ=255) cgcgcgTGGGCTGGAACATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGGTGATTATCGCCCCTCTGTTTTTCTTACTGCGGGTTTAAGATGTTTAAgg > 1:714700/1‑139 (MQ=255) | GCTTGCAGCTGCTAAATGCTATTTTTATTGGCATTCTGGGCGGCATCGGGATGCTCTATTTTCAGGATCTGATGCCCGGTCAGGCGGGTTCAGCCACCACGCTCTATACCAACACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTTACTGCGGATTAAAGATGTTTAAGG > NZ_CP009273/2258270‑2258525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |