| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,287,796 | C→T | L196L (CTG→CTA) | ccmF ← | cytochrome c‑type biogenesis heme lyase CcmF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,287,796 | 0 | C | T | 100.0% | 187.7 / NA | 47 | L196L (CTG→CTA) | ccmF | cytochrome c‑type biogenesis heme lyase CcmF |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (23/24); total (23/24) | |||||||||||
CACCAGCCACCCCAGCCGAGTTCGTAATAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTCAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATCGCGACCTTCAATCGGGAAGTTCGG > NZ_CP009273/2287665‑2287930 | caccaGCCACCCCAGCCGAGTTCGTAATAGGCCCATGCGGGACCGAGCACGATGCCGAGCGTCAGGAAGGTCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAaag < 2:178568/139‑1 (MQ=255) ccaGCCACCCCAGCCGAGTTCGTAATAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAaag > 1:84305/1‑137 (MQ=255) ccAGCCGAGTTCGTAATAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCa < 1:606402/139‑1 (MQ=255) cGAGTTCGTAATAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAg > 1:624674/1‑138 (MQ=255) ttCGTAATAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAAc > 2:755625/1‑139 (MQ=255) ttCGTAATAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAAc > 2:520000/1‑139 (MQ=255) aaTAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCAc > 2:694954/1‑139 (MQ=255) gCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCgag > 2:399060/1‑138 (MQ=255) gCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCgag > 2:358631/1‑138 (MQ=255) tGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAAcc > 2:664742/1‑138 (MQ=255) ccGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc < 1:358631/139‑1 (MQ=255) ccGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc < 1:664742/139‑1 (MQ=255) ccGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc < 1:124422/139‑1 (MQ=255) cGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCAtata < 1:755625/139‑1 (MQ=255) aGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGaaa < 1:703425/114‑1 (MQ=255) aGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGaaa > 2:703425/1‑114 (MQ=255) gCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAgg < 1:200792/139‑1 (MQ=255) tCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGag < 1:694954/139‑2 (MQ=255) accACGCTGCCAGCGTCCGCGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATAGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGAt < 2:685365/138‑1 (MQ=255) cACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCgaga < 1:383133/97‑1 (MQ=255) cACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCgaga > 2:383133/1‑97 (MQ=255) ccAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCg < 2:793250/138‑1 (MQ=255) gACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAg < 2:84305/139‑1 (MQ=255) aGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc > 1:46890/1‑86 (MQ=255) aGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc < 2:46890/86‑1 (MQ=255) cgcATAAGTGCTGTCCAGACGCCCTCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATcg < 1:263173/139‑1 (MQ=255) cgcATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATcg > 2:277246/1‑139 (MQ=255) gcATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCg < 2:334106/112‑1 (MQ=255) gcATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCg > 1:334106/1‑112 (MQ=255) cATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATcgc > 2:456475/1‑138 (MQ=255) tAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATCGCGAc < 1:702834/139‑1 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGaaa < 2:266857/54‑1 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGaaa > 1:266857/1‑54 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAccc > 1:694925/1‑65 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAccc < 2:694925/65‑1 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc < 1:64923/64‑1 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc > 2:64923/1‑64 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAgg > 2:77440/1‑80 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAgg < 1:77440/80‑1 (MQ=255) tCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATCGCGACCTTCAATCg > 1:337026/1‑139 (MQ=255) aCGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCAc > 1:246099/1‑54 (MQ=255) aCGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATCGCGACCTTCAATCGGGAAg > 2:169180/1‑139 (MQ=255) aCGCCCGCTTAGCAAAGAAGCAATAGCAAAAGCAAACGCCACCGAGAAACCCAc < 2:246099/54‑1 (MQ=255) cGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc > 2:150422/1‑54 (MQ=255) cGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAcc < 1:150422/54‑1 (MQ=255) cGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATCGCGACCTTCAATCGGGAAGTTCgg > 2:783385/1‑139 (MQ=255) cGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATCGCGACCTTCAATCGGGAAGTTCgg < 1:75359/139‑1 (MQ=255) | CACCAGCCACCCCAGCCGAGTTCGTAATAGGCCCATGCGGAACCGAGCACGATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTCAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGGATCCTGCAATAGCGGGTTAAGATCGCGACCTTCAATCGGGAAGTTCGG > NZ_CP009273/2287665‑2287930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |