| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,182,954 | T→A | D248V (GAT→GTT) | roxA ← | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,182,954 | 0 | T | A | 100.0% | 135.8 / NA | 35 | D248V (GAT→GTT) | roxA | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (17/18); total (17/18) | |||||||||||
ATTTCATCCGGCTGATAAGGCGGCTCTGGCGGCGCGATATCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTATCCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTGCCGCCCAGTTCACGTTGCAGCACATAATCGGCAAATCCACTAATCAGTTCCCGCGTATTT > NZ_CP009273/1182819‑1183082 | aTTTCATCCGGCTGATAAGGCGGCTCTGGCGGCGCGATATCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCa < 2:748704/139‑1 (MQ=255) ttCATCCGGCTGATAAGGCGGCTCTGGCGGCGCGATATCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCAtc > 2:709773/1‑139 (MQ=255) atggcggcTCTGGCGGTGCGATATCCAGTTCATTACGTGACTGAGATCTAAACTCGCCAAACCACTTCTTAAAGTGTTCCGGCTTGTTGATCAATTCTCGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGaa < 2:255797/136‑1 (MQ=255) gcggcTCTGGCGGCGCGATATCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATc > 2:369277/1‑139 (MQ=255) cgcgATATCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAgcg < 1:185513/139‑1 (MQ=255) cgcgATATCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAgcg < 1:622369/139‑1 (MQ=255) tCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTg < 1:837464/139‑1 (MQ=255) gACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAg < 2:428249/103‑1 (MQ=255) gACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAg > 1:428249/1‑103 (MQ=255) cGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGAt < 1:369277/139‑1 (MQ=255) cGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGAt < 2:438019/139‑1 (MQ=255) gACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGc > 1:825630/1‑139 (MQ=255) gACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGc > 1:253612/1‑139 (MQ=255) aCTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCt < 1:709773/139‑1 (MQ=255) atatAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTgtag > 1:182727/1‑137 (MQ=255) cGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAgg > 2:295313/1‑106 (MQ=255) cGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAgg < 1:295313/106‑1 (MQ=255) gCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTgccgcc > 1:99388/1‑138 (MQ=255) tCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg > 1:556441/1‑94 (MQ=255) tCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg < 2:556441/94‑1 (MQ=255) tCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTgtagt < 2:768799/106‑1 (MQ=255) tCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTgtagt > 1:768799/1‑106 (MQ=255) tCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTgccgcc > 2:695809/1‑98 (MQ=255) tCGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTgccgcc < 1:695809/98‑1 (MQ=255) cGAGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTGCCGCCCAGTTCACGTTGCAGCACATAATCGGCAAATCCACTAATCAg > 1:854258/1‑139 (MQ=255) aGCATCATCTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTGCCGCCCAGTTCACGTTGCAGCACATAATCGGCAAATCCACTAATCAGtt < 1:240343/139‑1 (MQ=255) atcTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg < 2:9967/67‑1 (MQ=255) atcTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg < 2:835234/67‑1 (MQ=255) atcTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg < 2:86028/67‑1 (MQ=255) atcTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg > 1:9967/1‑67 (MQ=255) atcTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg > 1:86028/1‑67 (MQ=255) atcTCACGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCg > 1:835234/1‑67 (MQ=255) aCGCAGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTGCCGCCCAGTTCACGTTGCAGCACATAATCGGCAAATCCACTAATCAGTTCCCGCGTAttt > 2:235611/1‑139 (MQ=255) aGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTGCCGCCCAGTTCa < 2:845524/87‑1 (MQ=255) aGTTTAACCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTGCCGCCCAGTTCa > 1:845524/1‑87 (MQ=255) | ATTTCATCCGGCTGATAAGGCGGCTCTGGCGGCGCGATATCCAGTTCATGACGTGACTGGGATATAAACTCGCCAAACCATTGCTTAAAGTGTTCCGGCTGGTTGATCAATTCGAGCATCATCTCACGCAGTTTATCCATCTCTTGCGGCAGAACATCCGCAGGATGAGCGCGAGGTGGAACATCCGGATCGCTGTAGTAGTTGCCGCCCAGTTCACGTTGCAGCACATAATCGGCAAATCCACTAATCAGTTCCCGCGTATTT > NZ_CP009273/1182819‑1183082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |