New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3626674	0 (0.000)	8 (0.550)	8/170	0.6	100%	pseudogene (1145/1607 nt)	BW25113_RS18065	YhiJ/YhiL family protein
	?	NZ_CP009273	3645396 =	NA (NA)					pseudogene (746/747 nt)	BW25113_RS18155	hypothetical protein

TTAAATGGAACCTGCAAAGCACCGAGACAATAACATTTTTTTCTTCATCTCTTATTATTCCGTGATGACTGGTTAAAACTTGCCTTTCTGAGTCATAATTACAAACATCGAGCGTTTTAATTAAGTTATACGTATCACCGGCAGAGAGTTTATGATTTGCTAGTCGTGCAG  >  NZ_CP009273/3626588‑3626758                                                                                       |                                                                                     ttAAATGGAACCTGCAAAGCACCGAGACAATAACATTTTTTTCTTCATCTCTTATTATTCCGTGATGACTGGTTAAAACTTGCCTTTggaa                                                                                  <  1:128466‑M1/91‑5 (MQ=255)         aaCCTGCAAAGCACCGAGACAATAACATTTTTTTCTTCATCTCTTATTATTCCGTGATGACTGGTTAAAACTTGCCTTTggaaggtgcgaa                                                                          <  1:109002‑M1/91‑13 (MQ=255)         aaCCTGCAAAGCACCGAGACAATAACATTTTTTTCTTCATCTCTTATTATTCCGTGATGACTGGTTAAAACTTGCCTTTggaaggtgcgaa                                                                          >  1:140853‑M1/1‑79 (MQ=255)                                          tcttcATCTCTTATTATTCCGTGATGACTGGTTAAAACTTGCCTTTggaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                         <  1:127141‑M1/91‑46 (MQ=255)                                                              gTGATGACTGGTTAAAACTTGCCTTTggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg                     >  2:221458‑M1/1‑26 (MQ=255)                                                                gatgaCTGGTTAAAACTTGCCTTTggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag                   >  2:366717‑M1/1‑24 (MQ=255)                                                                   gaCTGGTTAAAACTTGCCTTTggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg                >  1:82690‑M1/1‑21 (MQ=255)                                                                                 tGCCTTTggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt  >  1:245628‑M1/1‑7 (MQ=255)                                                                                       |                                                                                     TTAAATGGAACCTGCAAAGCACCGAGACAATAACATTTTTTTCTTCATCTCTTATTATTCCGTGATGACTGGTTAAAACTTGCCTTTCTGAGTCATAATTACAAACATCGAGCGTTTTAATTAAGTTATACGTATCACCGGCAGAGAGTTTATGATTTGCTAGTCGTGCAG  >  NZ_CP009273/3626588‑3626758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.