| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,500 | Δ4 bp | coding (124‑127/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613500 | 1613503 | 4 | 15 [0] | [0] 15 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613499 | 0 (0.000) | 15 (1.030) | 14/170 | 0.1 | 100% | coding (123/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613504 = | 0 (0.000) | coding (128/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
TGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGA > NZ_CP009273/1613417‑1613590 | ccattgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcaTTaa < 2:411945‑M2/4‑1 (MQ=255) attgggtcgcttaatccatatggttaatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcaTTAAgg < 2:254544‑M2/6‑1 (MQ=255) atggttaatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTg > 2:210049‑M2/67‑91 (MQ=255) gttaatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTgcgc < 2:239475‑M2/28‑1 (MQ=255) taatcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTGCgcgg < 2:39447‑M2/30‑1 (MQ=255) atcagaagaaagatcgcctgcttaacgagtatctgtctccgctggatattaccgcggcaTTAAGGAGCTCTGCTCTATCCGCTGCgcggcg < 1:412052‑M2/32‑1 (MQ=255) atctgtctccgctggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTa > 1:253847‑M2/30‑91 (MQ=255) tccgctggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgtcgg < 1:249314‑M2/69‑1 (MQ=255) ccgctggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgtcggt < 2:306021‑M2/70‑1 (MQ=255) cgctggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgtcggtc < 2:10088‑M2/71‑1 (MQ=255) tggatattaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGAc < 2:203542‑M2/74‑1 (MQ=255) attaccgcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTggg < 1:191641‑M2/79‑1 (MQ=255) gcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGAc > 1:308443‑M2/7‑80 (MQ=255) gcggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGAc < 2:308443‑M2/74‑1 (MQ=255) ggcaTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGa > 1:410030‑M2/5‑91 (MQ=255) | TGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGA > NZ_CP009273/1613417‑1613590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |