New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 283494162 (3.520)3 (0.070) 3/228 2.8 1.9% coding (995/1611 nt) yagH glycoside hydrolase family 43 protein
?NZ_CP009273 = 283506 158 (3.680)coding (1007/1611 nt) yagH glycoside hydrolase family 43 protein
Rejected: Frequency below/above cutoff threshold.

CTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/283351‑283494
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactggcgTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCCAGCCGTCGCGCCATTCAATGCGGGCGATGCCGGTC  <  NZ_CP009273/283506‑283369
                                                                                                                                                                                                                                                                                          
CTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAA                                                                                                                                                  <  1:493377/138‑1
   CCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGG                                                                                                                                              >  2:3461/1‑139
     CGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCG                                                                                                                                            >  1:350920/1‑139
     CGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCG                                                                                                                                            >  2:861943/1‑139
                                                                                          CGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGC                                                       >  1:823829/1‑139
                                                                                                            AGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCCGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCC                                     >  2:790375/1‑139
                                                                                                                                TTCCGGGCAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCCAGCCGTCGCGCCATTCAATG                 >  1:172277/1‑139
                                                                                                                                        AACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCCAGCCGTCGCGCCATTCAATGCGGGCGAT         >  1:379714/1‑139
                                                                                                                                          CTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCCAGCCGTCGCGCCATTCAATGCGGGCGATGC       >  2:870113/1‑139
                                                                                                                                              CGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCC                                     >  1:364421/1‑105
                                                                                                                                              CGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCC                                     <  2:364421/105‑1
                                                                                                                                               GTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCCAGCCGTCGCGCCATTCAATGCGGGCGATGCCGGTC  >  1:513445/1‑139
                                                                                                                                               GTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCCAGCCGTCGCGCCATTCAATGCGGGCGATGCCGGTC  >  2:590359/1‑139
                                                                                                                                                                                                                                                                                          
CTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/283351‑283494
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactggcgTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGGCTGCTCGGCTACTTGCGGGCCTTTCACGGTCAGCTGCGCGTGCTTGCCGCCTTCCACGTACGGCCAGCCGTCGCGCCATTCAATGCGGGCGATGCCGGTC  <  NZ_CP009273/283506‑283369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.