| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 481452 = | 1 (0.020) | 54 (1.180) | 36/242 | 0.2 | 98.2% | coding (236/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 3577554 | NA (NA) | intergenic (+14/‑210) | BW25113_RS17830/BW25113_RS25760 | IS1‑like element IS1A family transposase/hypothetical protein | |||||
GCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCT > NZ_CP009273/481315‑481588 | gCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGc > 1:893738/1‑138 (MQ=255)cataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacc < 1:831360‑M1/1‑1 (MQ=255)cataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCa > 1:202239‑M1/138‑139 (MQ=255) atctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTg < 2:435853‑M1/12‑1 (MQ=255) aggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGAt > 1:267317‑M1/123‑139 (MQ=255) aggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGAt < 1:329791‑M1/17‑1 (MQ=255) ggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATc > 2:168097‑M1/122‑139 (MQ=255) gcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATcc > 1:756798‑M1/121‑139 (MQ=255) agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCAc < 2:741500‑M1/21‑1 (MQ=255) cacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCActc > 2:831360‑M1/117‑139 (MQ=255) gcTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaac < 1:719893‑M2/139‑16 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:31961‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:693458‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 2:587480‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 2:656422‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:348480‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:741500‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:822847‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 2:667591‑M1/115‑139 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaaggcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:588523‑M1/115‑139 (MQ=255) gCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaactta > 1:528298‑M2/1‑120 (MQ=255) cacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTAt < 2:72238‑M1/30‑1 (MQ=255) ggctgggccggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTAtt < 1:472806‑M1/31‑1 (MQ=255) cgcgcgGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatt > 1:671475‑M2/1‑114 (MQ=255) cgcgcgGTGCAATCT‑CTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgattta > 1:463539‑M2/1‑113 (MQ=255) gcgcgGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgattta > 2:651739‑M2/1‑113 (MQ=255) ctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAaga > 1:435853‑M1/105‑139 (MQ=255) gTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaactta > 1:116802‑M2/1‑108 (MQ=255) gTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaactta < 2:116802‑M2/126‑19 (MQ=255) tCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatgg < 2:771995‑M2/139‑38 (MQ=255) gctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc < 1:581167‑M1/25‑1 (MQ=255) gctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 2:581167‑M1/91‑115 (MQ=255) gctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCa < 1:250068‑M1/49‑1 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatgg > 2:612328‑M2/1‑98 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatgg > 2:893738‑M2/1‑98 (MQ=255) tGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgttt < 2:658136‑M2/139‑43 (MQ=255) ttAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt < 1:770442‑M2/139‑50 (MQ=255) ttAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt < 1:615368‑M2/139‑50 (MQ=255) ttAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 2:462182‑M2/1‑90 (MQ=255) ttAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 1:771995‑M2/1‑90 (MQ=255) aatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCActc > 2:408794‑M1/77‑99 (MQ=255) aatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCActc < 1:408794‑M1/23‑1 (MQ=255) aGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatga > 1:155289‑M2/1‑81 (MQ=255) aGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatga < 2:155289‑M2/115‑35 (MQ=255) gTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg < 2:650897‑M2/139‑60 (MQ=255) ttCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg > 2:821845‑M2/1‑70 (MQ=255) ttCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg < 1:821845‑M2/120‑51 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCa > 1:690662‑M1/61‑109 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCa < 2:690662‑M1/49‑1 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACg < 1:598948‑M1/79‑1 (MQ=255) tCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagt > 1:323826‑M2/1‑69 (MQ=255) tCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagt < 2:323826‑M2/97‑29 (MQ=255) aGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat > 2:719893‑M2/1‑67 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCg > 2:83466‑M1/55‑139 (MQ=255) tcgggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGattat < 2:699377‑M1/90‑1 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTg > 1:699377‑M1/48‑139 (MQ=255) gAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc < 1:101712‑M2/139‑85 (MQ=255) gAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc < 2:138659‑M2/139‑85 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGAt > 2:329791‑M1/46‑139 (MQ=255) tGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgt < 2:703422‑M2/139‑89 (MQ=255) tCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat < 1:831176‑M2/121‑73 (MQ=255) tCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat > 2:831176‑M2/1‑49 (MQ=255) tctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGgaga > 1:74790‑M1/40‑138 (MQ=255) tctgaacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGgaga > 1:625565‑M1/40‑138 (MQ=255) aacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:325254‑M1/36‑60 (MQ=255) aacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc < 2:325254‑M1/25‑1 (MQ=255) aacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATtata > 1:658136‑M1/36‑139 (MQ=255) aacataaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATtata < 2:166609‑M1/104‑1 (MQ=255) atatTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgac < 1:28012‑M2/139‑101 (MQ=255) aaaacactatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCca < 2:537212‑M1/109‑1 (MQ=255) tatcaataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGc < 1:471245‑M1/116‑1 (MQ=255) gAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc < 2:297607‑M2/107‑77 (MQ=255) gAACTAGAGCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc > 1:297607‑M2/1‑31 (MQ=255) atcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc < 2:808423‑M1/25‑1 (MQ=255) atcaataagttggagtcattacCAAAATTCCCTGGCGATCCACtctc > 1:808423‑M1/23‑47 (MQ=255) aataagttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAAt < 2:602057‑M1/120‑1 (MQ=255) gagCTTGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaa < 2:756798‑M2/139‑115 (MQ=255) gttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGAAGATTATATTCCACAAATGCGAATTTGTc > 1:641964‑M1/15‑139 (MQ=255) ttggagtcattacCAAAATTCCCTGGCGATCCActct < 2:218359‑M1/24‑1 (MQ=255) ttggagtcattacCAAAATTCCCTGGCGATCCActct > 1:218359‑M1/14‑37 (MQ=255) ttggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCg > 1:116147‑M1/14‑139 (MQ=255) tGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatt < 2:172232‑M2/44‑25 (MQ=255) tGAGTATCAGGCAAAATTCCggtgatgctgccaacttactgatt > 1:172232‑M2/1‑20 (MQ=255) ggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATgg > 1:284564‑M1/12‑107 (MQ=255) ggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATgg < 2:284564‑M1/96‑1 (MQ=255) ggagtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCg < 2:432295‑M1/126‑1 (MQ=255) gAGTATCAGGCAAAATGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttctgctactgacggggtggtgcgtaacggc > 2:355755‑M2/1‑19 (MQ=255) agtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGa < 1:820591‑M1/69‑1 (MQ=255) agtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGa > 2:820591‑M1/10‑78 (MQ=255) agtcattacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGgaga > 2:174904‑M1/10‑139 (MQ=255) ttacCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATgg < 2:48326‑M1/135‑1 (MQ=255) aGGCAAAATTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc < 2:392178‑M2/139‑128 (MQ=255) ggCAAAATTCCggtgatgctgccaactttctgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccg > 1:686599‑M2/1‑11 (MQ=255) | GCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAATGGCT > NZ_CP009273/481315‑481588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |