| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4377011 = | 56 (1.220) | 4 (0.090) | 4/228 | 2.5 | 7.5% | coding (2177/3324 nt) | mscM | miniconductance mechanosensitive channel MscM |
| ? | NZ_CP009273 | 4377031 = | 46 (1.070) | coding (2157/3324 nt) | mscM | miniconductance mechanosensitive channel MscM | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAGATCGACTTCGCTTTCATCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTGCCAGATAACCCACCGCCGACGCCAGAAT > NZ_CP009273/4376875‑4377141 | gatgattggcgcgccgttggttgccattctggcgtcggcggtgggttatctggcaacggcacaggcgctgttagcgaggcttgaaacctcggttgccatctggttcctgctactggtggtttatcacgttatccgccgc < 1:873431‑M1/3‑1 (MQ=255)gagaTCGACTTCGCTTTCATCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGgcgc < 1:909525/139‑1 (MQ=255) atgattggcgcgccgttggttgccattctggcgtcggcggtgggttatctggcaacggcacaggcgctgttagcgaggcttgaaacctcggttgccatctggttcctgctactggtggtttatcacgttatccgcCGCt > 2:873431‑M1/136‑139 (MQ=255) tgattggcgcgccgttggttgccattctggcgtcggcggtgggttatctggcaacggcacaggcgctgttagcgaggcttgaaacctcggttgccatctggttcctgctactggtggtttatcacgttatccgcCGCTg > 2:632621‑M1/135‑139 (MQ=255) tgattggcgcgccgttggttgccattctggcgtcggcggtgggttatctggcaacggcacaggcgctgttagcgaggcttgaaacctcggttgccatctggttcctgctactggtggtttatcacgttatccgcCGCTg > 2:83905‑M1/135‑139 (MQ=255) gaTCGACTTCGCTTTCATCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTg > 1:724514/1‑139 (MQ=255) gaTCGACTTCGCTTTCATCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTg > 2:701327/1‑139 (MQ=255) gACTTCGCTTTCATCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGAt < 2:68527/138‑1 (MQ=255) gACTTCGCTTTCATCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGAt < 1:575306/138‑1 (MQ=255) aTCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAgcgg > 2:138275/1‑139 (MQ=255) gACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAgcggcg < 1:554668/138‑1 (MQ=255) aCTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGa < 1:756191/139‑1 (MQ=255) cAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATa < 2:78016/137‑1 (MQ=255) cTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATa < 1:648914/139‑1 (MQ=255) ccTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATaaa > 1:680016/1‑139 (MQ=255) cTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATaaa < 2:292895/138‑1 (MQ=255) cTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAac < 2:680016/139‑1 (MQ=255) aCTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGgcgc < 1:791843/94‑1 (MQ=255) aCTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGgcgc > 2:791843/1‑94 (MQ=255) aCTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAg > 1:449744/1‑138 (MQ=255) cTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAg > 1:363080/1‑137 (MQ=255) cTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGc < 2:690602/138‑1 (MQ=255) tgtgATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACcagcagcag > 2:315925/1‑139 (MQ=255) tgtgATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAg > 2:322668/1‑139 (MQ=255) tgtgATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAg > 2:434634/1‑139 (MQ=255) atgCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAAc > 2:207799/1‑136 (MQ=255) gcgcTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAg > 2:548787/1‑124 (MQ=255) gcgcTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAg < 1:548787/124‑1 (MQ=255) cgcTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATg > 1:809661/1‑139 (MQ=255) cgcTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATg > 1:663196/1‑139 (MQ=255) cTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATaaa > 1:447611/1‑114 (MQ=255) cTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATaaa < 2:447611/114‑1 (MQ=255) cTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATgg > 2:143503/1‑138 (MQ=255) ccTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTg > 1:347506/1‑79 (MQ=255) ccTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTg < 2:347506/79‑1 (MQ=255) ccTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCa < 2:298823/137‑1 (MQ=255) ctctTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAAc < 2:683631/138‑1 (MQ=255) cGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGCGGGCAACCggggg > 2:640941/1‑138 (MQ=255) cGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGa < 1:896417/136‑1 (MQ=255) cgcACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGc < 2:724514/139‑1 (MQ=255) cgcACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGc < 1:595916/139‑1 (MQ=255) cgcACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGc < 2:663196/139‑1 (MQ=255) cACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCt < 2:449744/139‑1 (MQ=255) cACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCt < 1:380578/139‑1 (MQ=255) cGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCg < 2:717551/139‑1 (MQ=255) ttGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCt < 1:138275/139‑1 (MQ=255) cgcTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAAc < 2:781777/139‑1 (MQ=255) cTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGc > 2:900418/1‑128 (MQ=255) cTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGc < 1:900418/128‑1 (MQ=255) cccGACGATGCTTCGCCCGATCAAACGCCAGACTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGt < 1:284122/139‑1 (MQ=255) ggCGATGCTTCGCCCGATCAAACGCCAGCCTgcggcg > 2:572914/1‑37 (MQ=255) ggCGATGCTTCGCCCGATCAAACGCCAGCCTgcggcg < 1:572914/37‑1 (MQ=255) aTGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTGCCAGa < 2:46869/139‑1 (MQ=255) aTGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTGCCAGa < 1:434634/139‑1 (MQ=255) gtggtttatcacgttatccgcCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCaa < 1:826324‑M1/76‑1 (MQ=255) gtggtttatcacgttatccgcCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCaa > 2:826324‑M1/22‑97 (MQ=255) aGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGGCGTTGCCAGATAACCCACCGCCGACGCCAGaa < 1:788264/139‑1 (MQ=255) gCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTGCCAGATAACCCACCGCCGACGCCAGAAt > 1:506523/1‑139 (MQ=255) tatccgcCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTg > 1:748938‑M1/8‑110 (MQ=255) tatccgcCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTg < 2:748938‑M1/103‑1 (MQ=255) cggcgCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTGCCAGATAACCCAccgcc < 2:353489/123‑1 (MQ=255) cggcgCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTGCCAGATAACCCAccgcc > 1:353489/1‑123 (MQ=255) ggcgCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTg > 2:497326/1‑105 (MQ=255) ggcgCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTg < 1:497326/105‑1 (MQ=255) | GAGATCGACTTCGCTTTCATCGACTTCAATTGCTCCTTCCGGGCTACTGTGATGATGCGCTTCCTCTTCGCCACGCGCACGTTGCGCTAACATCTCTGCCCGGCGATGCTTCGCCCGATCAAACGCCAGCCTGCGGCGCTGGATCAGCATCCAGCGGCGGATAACGTGATAAACCACCAGTAGCAGGAACCAGATGGCAACCGAGGTTTCAAGCCTCGCTAACAGCGCCTGTGCCGTTGCCAGATAACCCACCGCCGACGCCAGAAT > NZ_CP009273/4376875‑4377141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |