New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3613238 =	NA (NA)	4 (0.090)	3/226	2.8	100%	coding (687/4236 nt)	rhsB	rhs element protein RhsB
	?	NZ_CP009273	3613252 =	0 (0.000)					coding (701/4236 nt)	rhsB	rhs element protein RhsB

AGCGGGTGCCGGAAGCGGATGAGGTGCTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGC  >  NZ_CP009273/3613120‑3613290                                                                                                                                     |                                       aaagcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCgg                                  >  1:110653‑M2/133‑139 (MQ=255) aaagcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCgg                                  >  2:511683‑M2/133‑139 (MQ=255)  aagcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGc                                 >  1:325810‑M2/132‑139 (MQ=255)   agcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCg                                >  1:276215‑M2/131‑139 (MQ=255)   agcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCg                                >  1:369588‑M2/131‑139 (MQ=255)   agcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCg                                >  1:395259‑M2/131‑139 (MQ=255)   agcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCg                                >  2:307867‑M2/131‑139 (MQ=255)   agcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCg                                >  2:479335‑M2/131‑139 (MQ=255)   agcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCg                                >  2:705443‑M2/131‑139 (MQ=255)       gacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCGTGAc                            <  2:395259‑M2/13‑1 (MQ=255)                                cctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCgg   >  1:793096‑M2/102‑139 (MQ=255)                                 ctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGc  <  1:574023‑M2/39‑1 (MQ=255)                                 ctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGc  <  2:793096‑M2/39‑1 (MQ=255)                                                                                                                                     |                                       AGCGGGTGCCGGAAGCGGATGAGGTGCTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGC  >  NZ_CP009273/3613120‑3613290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.