New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 26622	71 (1.450)	3 (0.060)	3/236	3.5	4.2%	coding (346/951 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
	?	NZ_CP009273	= 26624	68 (1.450)					coding (348/951 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGGAAGTCGCCCGCGCCAGTCGCCGTGGCGAAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/26586‑26622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaatAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGAGAAACACCGTGTGCGGAG  <  NZ_CP009273/26624‑26489                                                                                                                                                                               ATGGAAGTCGCCCGCGCCAGTCGCCGTGGCGAAGAATAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCT                                      >  1:304458/1‑137 ATGGAAGTCGCCCGCGCCAGTCGCCGTGGCGAAGAATAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCT                                      <  2:304458/137‑1               CGCCAGTCGCCGTGGCGAAGAATAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCT                      >  1:221455/1‑139                                   AATAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCGCTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGAGAAACACCGTGTGCGGAG  <  2:829769/139‑1                                   AATAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGAGCAACACCGTGTGCG     >  1:354558/1‑136                                   AATAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGAGAAACACCGTGTGCGGAG  <  1:216876/139‑1                                   AATAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGAGAAACACCGTGTGCGGAG  <  2:221455/139‑1                                     TAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGA                    >  1:465447/1‑119                                     TAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGA                    <  2:465447/119‑1                                                                                                                                                                               ATGGAAGTCGCCCGCGCCAGTCGCCGTGGCGAAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/26586‑26622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaatAGATTCTTCGCCACGGCGACTGGCGCGGGCGACTTCCATATGCACTTTGGTCACCAGCGGACAGGTGGCATCAAACACCGTCAAATCGCGACTTTTTGCTTCGTTACGTACCGCCTGAGAAACACCGTGTGCGGAG  <  NZ_CP009273/26624‑26489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.