| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,095,990 | (C)5→4 | coding (222/720 nt) | trmB ← | tRNA (guanosine(46)‑N7)‑methyltransferase TrmB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,095,986 | 0 | C | . | 100.0% | 228.0 / NA | 51 | coding (226/720 nt) | trmB | tRNA (guanosine(46)‑N7)‑methyltransferase TrmB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (23/28); total (23/28) | |||||||||||
CATCGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCTGGCC > NZ_CP009273/3095848‑3096115 | cATCGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGc > 1:56458/1‑139 (MQ=255) tCGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccc < 2:418955/139‑1 (MQ=255) tCGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccc < 2:616736/139‑1 (MQ=255) tCGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccc > 1:966662/1‑139 (MQ=255) tGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccccat > 1:867620/1‑137 (MQ=255) tCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCaaaa < 2:278386/139‑1 (MQ=255) aCGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAAcc < 2:433307/139‑1 (MQ=255) cgcgCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAAcc > 2:537133/1‑138 (MQ=255) gTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccc < 1:225364/119‑1 (MQ=255) gTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccc > 2:225364/1‑119 (MQ=255) cTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGt > 1:664771/1‑139 (MQ=255) cttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCt > 2:878059/1‑139 (MQ=255) cATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCtt < 1:589653/137‑1 (MQ=255) cATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCtt < 2:361971/137‑1 (MQ=255) aTGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCa < 2:14095/138‑1 (MQ=255) aTGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCa < 2:889407/138‑1 (MQ=255) aGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCa > 1:848267/1‑138 (MQ=255) gcacgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcccc > 1:238611/1‑87 (MQ=255) gcacgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcccc < 2:238611/87‑1 (MQ=255) cacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGaaa > 2:182569/1‑139 (MQ=255) cacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGaaa < 2:1082522/139‑1 (MQ=255) acCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAAtct < 2:924476/97‑1 (MQ=255) acCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAAtct > 1:924476/1‑97 (MQ=255) ccAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATc < 2:457356/139‑1 (MQ=255) ggTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATc > 1:1188975/1‑139 (MQ=255) ggTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATc > 2:163938/1‑139 (MQ=255) tGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCtt > 2:1173860/1‑139 (MQ=255) aaTGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCg > 2:408956/1‑139 (MQ=255) tGCACTTCAATGCCGAGGAAGTCCTGCTCTGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCt > 1:619748/1‑139 (MQ=255) tGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCt < 1:537133/139‑1 (MQ=255) tGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCt < 2:664771/139‑1 (MQ=255) ccGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGcc < 1:182569/139‑1 (MQ=255) ccGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCGTCGCTGAACTCAACGcc < 2:619748/139‑1 (MQ=255) ccGAGGAAGTCCTGCTCAAGGCGAGCTGTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCATAAAGCGCGGGGAAATCCAGCATATCTTCGCCGAACTCAACGcc < 2:1144750/139‑1 (MQ=255) ccGAGGAAGTCCTGCTC‑GGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGcc < 2:1242950/138‑1 (MQ=255) aGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACg < 1:1030301/88‑1 (MQ=255) aGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACg > 2:1030301/1‑88 (MQ=255) aGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCgg > 1:673955/1‑102 (MQ=255) aGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCgg < 2:673955/102‑1 (MQ=255) aGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCAt > 1:1220758/1‑139 (MQ=255) aGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCAt > 1:439988/1‑139 (MQ=255) gAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCa < 1:224419/139‑1 (MQ=255) gAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCa < 2:886089/139‑1 (MQ=255) ggCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCa < 2:1066955/70‑1 (MQ=255) ggCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCa > 1:1066955/1‑70 (MQ=255) ggCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGttt > 2:653559/1‑139 (MQ=255) ggCGATCTTTAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGttt > 2:643872/1‑139 (MQ=255) tAGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAg < 1:643872/135‑1 (MQ=255) aGCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCa < 1:163938/138‑1 (MQ=255) gCCATTGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATg < 1:878059/139‑1 (MQ=255) ttGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTcc > 1:587648/1‑139 (MQ=255) ttGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTcc < 1:1173860/139‑1 (MQ=255) tGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCa > 2:1052799/1‑82 (MQ=255) tGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCa < 1:1052799/82‑1 (MQ=255) tGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCa < 2:20941/99‑1 (MQ=255) tGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCa > 1:20941/1‑99 (MQ=255) tGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCt > 1:396117/1‑139 (MQ=255) tGCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCt > 1:1201250/1‑139 (MQ=255) gCCACCAGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCt < 2:439988/138‑1 (MQ=255) accaGCGACG‑CCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCTGGcc < 1:408956/139‑1 (MQ=255) | CATCGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCTGGCC > NZ_CP009273/3095848‑3096115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |