| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,829,894 | (C)6→5 | pseudogene (140/162 nt) | BW25113_RS26245 → | virulence RhuM family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,829,889 | 0 | C | . | 97.2% | 305.1 / 1.8 | 71 | pseudogene (135/162 nt) | BW25113_RS26245 | virulence RhuM family protein |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (34/35); total (35/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01 | |||||||||||
GGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGCCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACTT > NZ_CP009273/3829753‑3830020 | ggCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccc < 2:44447/139‑1 (MQ=255)ggCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcc < 2:246229/138‑1 (MQ=255) gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcccc > 1:1012901/1‑139 (MQ=255) gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcccc > 2:1206659/1‑139 (MQ=255) gCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcccc > 2:1257577/1‑139 (MQ=255) aGGAATACCTGGTCTAGGGTTTTGTGATGGCCGAGGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCAGCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctgct < 2:80220/139‑5 (MQ=255) aGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctgct < 2:1286244/139‑5 (MQ=255) aCCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctgct < 2:854398/133‑5 (MQ=255) aCCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGccccctgct > 1:854398/1‑129 (MQ=255) ccTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGActct < 2:891140/138‑1 (MQ=255) ggTCTAAGGTTTTGTGATGGCCGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACACATCCGCGATATTCACGCCAGTATGCGCCGTGATTATTTGCAGGTGATTTG‑CCCCCTGCTGCATCTCTGc > 2:381673/1‑139 (MQ=255) tCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGcc > 1:1152075/1‑138 (MQ=255) aGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCaa < 1:1257797/136‑1 (MQ=255) ttttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt < 1:564578/139‑1 (MQ=255) ttttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt < 1:466841/139‑1 (MQ=255) ttttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt < 1:261002/139‑1 (MQ=255) ttttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt < 2:1250367/139‑1 (MQ=255) ttttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTAt < 2:1012901/139‑1 (MQ=255) ttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCg > 1:169198/1‑139 (MQ=255) ttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCg > 1:185376/1‑139 (MQ=255) ttGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCg > 1:984608/1‑139 (MQ=255) tgtgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGCCCCCCTGCTGACTCTCAGCCAACTGTATCg > 1:820851/1‑139 (MQ=255) tgtgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGc > 2:1156550/1‑139 (MQ=255) tgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCa > 2:1255912/1‑139 (MQ=255) tgATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCa > 2:424121/1‑139 (MQ=255) aTGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCAtt < 2:984608/139‑1 (MQ=255) tGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTa < 1:1184029/139‑1 (MQ=255) tGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTg > 1:562990/1‑137 (MQ=255) gCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGAtgtt > 2:385537/1‑139 (MQ=255) aTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt < 1:804376/139‑1 (MQ=255) aTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt < 2:1085917/139‑1 (MQ=255) aTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt < 2:893996/139‑1 (MQ=255) aTCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt < 1:1212191/139‑1 (MQ=255) tCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTc > 2:456769/1‑139 (MQ=255) cGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCa < 1:757945/112‑1 (MQ=255) cGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCa > 2:757945/1‑112 (MQ=255) cGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGc > 1:479622/1‑139 (MQ=255) cGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGc > 1:475759/1‑139 (MQ=255) cGCCTGGCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGc < 2:230358/139‑1 (MQ=255) tCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAg > 1:499910/1‑138 (MQ=255) cttctGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAcc < 1:1257577/138‑1 (MQ=255) cttctGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACAcc < 2:159539/138‑1 (MQ=255) tGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcccc > 1:24848/1‑67 (MQ=255) tGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGcccc < 2:24848/67‑1 (MQ=255) cTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTta < 1:984026/138‑1 (MQ=255) cTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTta > 1:679703/1‑138 (MQ=255) gAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGActct > 1:977397/1‑71 (MQ=255) gAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGActct < 2:977397/71‑1 (MQ=255) gAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt < 1:925287/113‑1 (MQ=255) gAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt > 2:925287/1‑113 (MQ=255) gAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATAc < 2:893301/138‑1 (MQ=255) aaCGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGa < 2:169198/139‑1 (MQ=255) aCGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGAc < 1:14042/139‑1 (MQ=255) cATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt < 2:110220/108‑1 (MQ=255) cATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACt > 1:110220/1‑108 (MQ=255) cgcgATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGActattcta < 1:829369/139‑1 (MQ=255) cgATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGCCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGActattctat < 2:820851/139‑1 (MQ=255) ttCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCtt > 1:703635/1‑138 (MQ=255) gCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGAc > 2:16638/1‑120 (MQ=255) gCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGAc < 1:16638/120‑1 (MQ=255) aGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTg > 2:794368/1‑139 (MQ=255) aGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTg > 1:194946/1‑139 (MQ=255) aGTATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTg > 1:427834/1‑139 (MQ=255) tATGCGCCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGc > 2:1020226/1‑139 (MQ=255) cgcCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCg > 2:731092/1‑56 (MQ=255) cgcCGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCg < 1:731092/56‑1 (MQ=255) cGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGa > 2:737555/1‑89 (MQ=255) cGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGa < 1:737555/89‑1 (MQ=255) cGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGaaaaa > 1:1253284/1‑138 (MQ=255) cGTGTTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGaaaaa > 2:1210701/1‑138 (MQ=255) tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAAc < 1:424121/139‑1 (MQ=255) tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAAc < 1:1255912/139‑1 (MQ=255) tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAAc < 2:562990/139‑1 (MQ=255) tgtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAAc > 1:1238884/1‑139 (MQ=255) gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGa > 2:299087/1‑104 (MQ=255) gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGa < 1:299087/104‑1 (MQ=255) gtTTATTTGCAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACt > 1:1035542/1‑139 (MQ=255) cAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATaaa > 1:1204327/1‑139 (MQ=255) cAGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATaaa > 1:112939/1‑139 (MQ=255) aGGTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAAc < 1:1020226/139‑1 (MQ=255) gTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACtt < 2:1238884/139‑1 (MQ=255) gTGATTTG‑CCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACtt < 2:1204327/139‑1 (MQ=255) | GGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAATCCGCCTGTCGGTTCTTCTGTCCTCGAACGCATCCGCGATATTCACGCCAGTATGCGCCGTGTTTATTTGCAGGTGATTTGCCCCCCTGCTGACTCTCAGCCAACTGTATCGCCATTAAGGTGAAGATGTTGTTTTACTCGCCCCAGAACACCCTTTTTTATACGACTATTCTATTTCTTTAACCGCTGGCGAAAAAAACTGACTATAAACTT > NZ_CP009273/3829753‑3830020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |