| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,141,321 | (T)5→4 | coding (1706/2652 nt) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,141,317 | 0 | T | . | 90.3% | 253.0 / 24.8 | 72 | coding (1710/2652 nt) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base T (2/5); new base . (32/33); total (34/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.61e-02 | |||||||||||
CCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATAC > NZ_CP009273/4141187‑4141449 | ccTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAg > 1:465629/1‑139 (MQ=255) ttCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGttt > 2:1231739/1‑139 (MQ=255) ttCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGgtt > 1:1100406/1‑139 (MQ=255) gTTCCGCGCGGGCCGCTTTTCGGTCTTCCGGGCGGTTGTGACAGCAGCGCCGCATGAGGAGGTGCGCCGCCGCAACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGa < 2:862809/139‑1 (MQ=255) gcgcAGGCCGCTTTTCAGGCTTCCTGGGGGTTGGGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGCCCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATg < 1:316016/139‑1 (MQ=255) gcgcAGGCCGCCTTTCGGGCTTCCTGGGGGTTGGGACAGCAGCGCCGCATGAGCGGGTGCCCCGCCGCGCCCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATg < 2:465629/139‑1 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATg > 1:1093238/1‑139 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGAttctgtc > 1:283805/1‑134 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATg > 2:321103/1‑138 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATg > 2:175120/1‑138 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGc > 2:98563/1‑139 (MQ=255) gggCCGCCTTTCGGGCTTCCTGGGGGTTGTGCCAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGA‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATc < 2:358501/138‑1 (MQ=255) gccgccTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCAGGAGCAGGTGCGCCGCCGCGACCAAGGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCt < 1:98563/139‑1 (MQ=255) gccgccTTCCAGGCTTCCTGGGGGTTGGGACAGCAGCGCCGAAGGAGCGGGTGCGCCGCCGCGACCAATGA‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCt < 2:124398/139‑1 (MQ=255) gcccccTGTCAGGCTTCCTGGCGTTTGTGCCGGCAGCGCCGCATGAGCAGGGGCGCCGCCGCGCCCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCt < 2:1278162/139‑1 (MQ=255) ccgccTTTCAGGCTCCCGGGGGTTTGTGACACCCGCCCCGACTGGGGGGGTGCGCCGCCGCTACAAAGGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCt < 1:640400/139‑1 (MQ=255) ccTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGc > 1:713788/1‑139 (MQ=255) tCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATTG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGACATTacg > 1:1155320/1‑139 (MQ=255) cTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGcc > 2:1170248/1‑139 (MQ=255) ggggTTGTGACAGCGCCGCCGCATGAGGGGGGGCCCCCCCGCGACCAAGGT‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAg < 2:1220807/137‑1 (MQ=255) cGGTGGTGACCGCAGCGCGGCAGGGGGGGGGGCGCCCCCGCCACCAGGGA‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAgg < 2:656844/139‑1 (MQ=255) tgACAGCGGCGCCGCATGAGCAGGTGCGCCGCCGCAACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt < 1:904134/138‑1 (MQ=255) ccggcgcCGCGTGGGCGGGGGCGCCCCCGCGA‑CAATGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATc < 2:867842/136‑1 (MQ=255) cgccgcATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACt > 1:1033060/1‑139 (MQ=255) cgccgcATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTc > 2:640122/1‑139 (MQ=255) cgctggAGCGGGTGCGCCCCCGCCACCAAGGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTccc < 2:1093238/134‑1 (MQ=255) gcATGAGCAGGCGCCCCGCCCCGCCAAATGG‑ACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTCCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGc < 2:111042/139‑1 (MQ=255) ggggcgcCGCCGCGACAAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGc < 1:71617/136‑1 (MQ=255) ggTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTCCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGc > 1:111042/1‑139 (MQ=255) gTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCt > 1:896953/1‑139 (MQ=255) cgcccccgcGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAg < 2:22878/139‑1 (MQ=255) ccccgccgaGCCCAAGGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAg < 2:1155320/137‑1 (MQ=255) gccgccgcGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGt > 2:298471/1‑139 (MQ=255) gccgccgcGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGt < 2:792863/139‑1 (MQ=255) gccgccgcGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGt > 2:1188824/1‑139 (MQ=255) ccgccgcGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTc > 1:529115/1‑139 (MQ=255) cgccgcGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCg > 1:990422/1‑139 (MQ=255) ccgcGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGa < 2:529115/139‑1 (MQ=255) gcgACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGaa > 2:1083794/1‑138 (MQ=255) gcccAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAg < 1:1144042/137‑1 (MQ=255) gg‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 2:736579/1‑139 (MQ=255) aaaCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatcat < 1:955793/138‑1 (MQ=255) aCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAAtcatca > 2:66065/1‑139 (MQ=255) cgccgcGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTg < 2:390362/113‑1 (MQ=255) cgccgcGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTg > 1:390362/1‑113 (MQ=255) ccgcGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTccc > 2:355685/1‑101 (MQ=255) ccgcGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTccc < 1:355685/101‑1 (MQ=255) ccgcGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCAt > 1:534924/1‑139 (MQ=255) ccgcGACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCAt > 1:828669/1‑139 (MQ=255) gACCGTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGt < 1:175120/139‑1 (MQ=255) gTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGCTATTGCGCCCAGGAAGCTGCCATCACTCCCg > 2:1137318/1‑94 (MQ=255) gTGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCg < 1:1137318/94‑1 (MQ=255) tGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGa > 2:187787/1‑42 (MQ=255) tGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGa < 1:187787/42‑1 (MQ=255) tGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc > 1:702850/1‑139 (MQ=255) tGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAACGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGtt < 1:668684/135‑1 (MQ=255) tGGAACAACGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAACGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGtt > 2:668684/1‑135 (MQ=255) aacGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAAt < 1:904209/139‑1 (MQ=255) acGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCt < 2:768460/47‑1 (MQ=255) acGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCt > 1:768460/1‑47 (MQ=255) cGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCt > 1:259008/1‑46 (MQ=255) cGTCAGCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCt < 2:259008/46‑1 (MQ=255) gCTCAATACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCa < 1:1168980/139‑1 (MQ=255) cTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCa < 1:930999/139‑1 (MQ=255) aaTACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGa < 2:896953/138‑1 (MQ=255) aTACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 2:534924/139‑1 (MQ=255) aTACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 2:747979/139‑1 (MQ=255) aTACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:736579/139‑1 (MQ=255) aTACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa > 1:747979/1‑139 (MQ=255) aTACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:1098056/139‑1 (MQ=255) tACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:923646/139‑1 (MQ=255) tACCCGC‑TTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATAc > 1:162258/1‑139 (MQ=255) | CCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGTGACAGCAGCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATAC > NZ_CP009273/4141187‑4141449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |