| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,585,319 | Δ1 bp | coding (350/915 nt) | lgoR ← | GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,585,317 | 0 | C | . | 97.9% | 420.6 / 1.7 | 96 | coding (352/915 nt) | lgoR | GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (58/36); total (59/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 | |||||||||||
TGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCA > NZ_CP009273/4585193‑4585447 | tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:652336/1‑139 (MQ=255)tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:638346/1‑139 (MQ=255)tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:804632/1‑139 (MQ=255)tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:543926/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTcc > 1:90964/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTg < 1:1161792/119‑1 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTg > 2:1161792/1‑119 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGt > 1:937110/1‑134 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGt < 2:937110/134‑1 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:103451/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:753631/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 1:801826/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 1:770291/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:1225780/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:884377/1‑139 (MQ=255) aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 1:1275030/1‑139 (MQ=255) aTTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTggg < 2:480579/139‑1 (MQ=255) aTTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTggg < 2:663988/139‑1 (MQ=255) aTTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTggg > 2:1002718/1‑139 (MQ=255) ttGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGc > 2:520422/1‑139 (MQ=255) tCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAAc > 2:1012539/1‑139 (MQ=255) cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:860781/138‑1 (MQ=255) cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:1254354/138‑1 (MQ=255) cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 2:801826/138‑1 (MQ=255) cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:90964/138‑1 (MQ=255) cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:986108/137‑1 (MQ=255) cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTg > 1:31008/1‑139 (MQ=255) gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 2:492354/1‑132 (MQ=255) gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 1:492354/132‑1 (MQ=255) gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTa > 2:75282/1‑139 (MQ=255) gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTa > 1:589974/1‑139 (MQ=255) gcgcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatca > 1:77796/1‑139 (MQ=255) gcgcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatca > 2:626714/1‑139 (MQ=255) gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatcatc > 2:384807/1‑139 (MQ=255) gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatcatc > 2:791244/1‑139 (MQ=255) gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatcatc > 2:844835/1‑139 (MQ=255) gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGACGCTGGTTTatcatc > 2:910432/1‑139 (MQ=255) cTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCg < 1:384807/139‑1 (MQ=255) tataACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCaaa > 2:960314/1‑138 (MQ=255) ataACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAac < 1:753631/138‑1 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGaa > 1:957117/1‑77 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGaa < 2:957117/77‑1 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTcccc > 2:314520/1‑88 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTcccc < 1:314520/88‑1 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:587079/104‑1 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 1:587079/1‑104 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAacac > 2:708192/1‑139 (MQ=255) aCGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACt < 1:1012539/138‑1 (MQ=255) ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgtt > 1:885798/1‑139 (MQ=255) ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgtt > 1:634732/1‑139 (MQ=255) ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgtt < 2:31008/139‑1 (MQ=255) ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACcttgtt > 1:463920/1‑139 (MQ=255) tAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCa < 1:642807/138‑1 (MQ=255) tAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCa < 1:543926/138‑1 (MQ=255) ttCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg < 1:75282/139‑1 (MQ=255) ttCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg < 2:42518/139‑1 (MQ=255) ttACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCgg < 2:877712/137‑1 (MQ=255) ttACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCgg < 2:393634/137‑1 (MQ=255) ctactacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCgg < 2:1209235/136‑1 (MQ=255) actacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAg < 1:4598/96‑1 (MQ=255) actacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAg > 2:4598/1‑96 (MQ=255) ctacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtagta < 2:77796/139‑1 (MQ=255) ctacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtagta > 1:1152853/1‑139 (MQ=255) acAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtagta > 1:1091988/1‑137 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 1:1104119/1‑68 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 2:1200822/1‑68 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 1:1200822/68‑1 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:1104119/68‑1 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcg > 2:236578/1‑67 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcg < 1:236578/67‑1 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCAt < 2:544657/121‑1 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCAt > 1:544657/1‑121 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 2:237668/1‑139 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 1:790190/1‑139 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 2:1184554/1‑139 (MQ=255) aCCGGGCTGACACCCGCGG‑CCGAGCCAGGGGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCGCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 1:398029/1‑139 (MQ=255) cGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 1:809302/1‑66 (MQ=255) cGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:809302/66‑1 (MQ=255) ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 1:651412/64‑1 (MQ=255) ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 2:651412/1‑64 (MQ=255) ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:881765/62‑1 (MQ=255) ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc > 2:881765/1‑62 (MQ=255) ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:924603/1‑139 (MQ=255) ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:685048/1‑139 (MQ=255) ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:526202/1‑139 (MQ=255) gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGc < 2:394109/122‑1 (MQ=255) gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGc > 1:394109/1‑122 (MQ=255) gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAc > 1:498059/1‑139 (MQ=255) gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAc > 2:952456/1‑139 (MQ=255) cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc > 2:811012/1‑86 (MQ=255) cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc < 1:811012/86‑1 (MQ=255) cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAcc > 2:1160669/1‑139 (MQ=255) cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAcc > 1:229502/1‑139 (MQ=255) acacCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCg < 2:685048/137‑1 (MQ=255) acacCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGt > 1:835990/1‑138 (MQ=255) cacCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGtca < 1:708192/139‑1 (MQ=255) | TGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCA > NZ_CP009273/4585193‑4585447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |