New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1390700 =	NA (NA)	47 (0.740)	32/240	0.6	50.5%	coding (332/981 nt)	BW25113_RS06980	IS5‑like element IS5 family transposase
	?	NZ_CP009273	1422137 =	46 (0.720)					coding (847/981 nt)	BW25113_RS07180	IS5‑like element ISKpn26 family transposase

TGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/1390834‑1390700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  >  NZ_CP009273/1422137‑1422267                                                                                                                                                                                                                                                                            TGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGAT                                                                                                                                 >  1:476981/1‑139             AGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGG                                                                                                                     <  1:537241/139‑1                  GGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCT                                                                                                                <  1:312830/139‑1                  GGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCT                                                                                                                <  1:662879/139‑1                   GTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTC                                                                                                               <  1:1208825/139‑1                    TGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTC                                                                                                               >  2:330703/1‑138                       CTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACC                                                                                                           <  1:75473/139‑1                                 GTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTC                                                                                                               <  2:835793/125‑1                                 GTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTC                                                                                                               >  1:835793/1‑125                                    GCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGC                                                                                              >  2:737919/1‑139                                    GCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGC                                                                                              >  1:685908/1‑139                                      ATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTG                                                                                            <  2:1099430/139‑1                                      ATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTG                                                                                            >  2:400504/1‑139                                         GACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCT                                                                                         <  1:330703/139‑1                                          ACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTT                                                                                        >  1:523024/1‑139                                                   CCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATT                                                                               >  2:833944/1‑139                                                   CCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGC                                                                                              >  2:773137/1‑124                                                   CCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGC                                                                                              <  1:773137/124‑1                                                   CCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGG                                                                                                                     >  1:114478/1‑101                                                   CCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGG                                                                                                                     <  2:114478/101‑1                                                     TTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCA                                                                                                     >  2:1054568/1‑115                                                     TTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCA                                                                                                     <  1:1054568/115‑1                                                                    GCCTGCGTCGGAAAGAAAGAGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGAACGGATGAGGGCTTTCATGTATTCGATGTTGATGGCCGTT                                                              >  1:832981/1‑139                                                                      CTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTT                                                            >  2:418637/1‑139                                                                        GCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGT                                                          >  2:593316/1‑139                                                                              GCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGC                                                                                                      >  2:914308/1‑89                                                                              GCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGC                                                                                                      <  1:914308/89‑1                                                                                             ATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCA                                     <  2:419351/139‑1                                                                                             ATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTC                                      <  1:418637/138‑1                                                                                                   TTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTT                               >  1:1190498/1‑139                                                                                                   TTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGC                                                  <  2:1188384/120‑1                                                                                                   TTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGC                                                  >  1:1188384/1‑120                                                                                                           TTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTG                       >  1:1056565/1‑139                                                                                                           TTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTG                       >  1:674447/1‑139                                                                                                           TTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGT                                                          >  2:319775/1‑104                                                                                                           TTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGT                                                          <  1:319775/104‑1                                                                                                           TTGGCGGGCCAGTTGATGCTGCTCCAGCATGATGATGCGAAACAGGTGCTCCACCCGGGCACGGATGCTGCATTTCATGTATTCGATGTTGATGGCAGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTG                       >  2:635591/1‑139                                                                                                                   CCAGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACG               >  1:1156884/1‑139                                                                                                                     AGTTGATGCTGCTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCT             >  2:1166820/1‑139                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCGCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  >  2:761148/1‑139                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  >  2:566733/1‑139                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  <  2:674447/139‑1                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  >  2:468666/1‑139                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  >  2:417093/1‑139                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGA                 <  1:1699/124‑1                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGA                 >  2:1699/1‑124                                                                                                                                CTCCAGCATGATGATGCGAAACGGGTGCTCCACCCTGGCACGGACGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  >  2:1091210/1‑139                                                                                                                                                                                                                                                                            TGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/1390834‑1390700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGC  >  NZ_CP009273/1422137‑1422267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.