| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3333655 | 63 (0.990) | 3 (0.050) | 3/222 | 5.4 | 4.9% | coding (22/978 nt) | yrbG | calcium/sodium antiporter |
| ? | NZ_CP009273 | = 3333682 | 58 (0.980) | coding (49/978 nt) | yrbG | calcium/sodium antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3333510‑3333655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcactgtAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGACTTTATGCGGCT < NZ_CP009273/3333682‑3333546 CGTGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACG < 1:116051/139‑1CGTGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACG < 2:353246/139‑1CGTGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACG > 1:271097/1‑139CGTGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACG > 1:410732/1‑139CGTGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACG > 1:899263/1‑139 TGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGC < 1:295783/139‑1 TGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGC < 1:488336/139‑1 GTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCA < 1:463016/138‑1 GTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCA < 1:625443/138‑1 TTCTGAAAATCTTCAGCGGACCGGCGAGTATAACTGAAGAAAGGGCGTTAGGTGCTTTTAGCTTCGGCACTGTAAACGACCAAAAGTAAACCAACAATTAACAATGCCGTAGCTAAAAACATCTAACGGCCTTTATT > 1:40304/1‑137 GCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCA < 1:1025368/54‑1 GCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCA > 2:1025368/1‑54 ACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGC > 2:712127/1‑139 AAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAG > 1:537128/1‑139 GCACTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGACTTTATG < 2:1186927/139‑1 CTGTAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGACTTTATGCGG < 1:751455/139‑1 TAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGACTTTATGCGGCT > 2:1218051/1‑138 TAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGACTTTATG > 2:216808/1‑133 TAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGACTTTATG < 1:216808/133‑1 TAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGA < 2:237636/126‑1 TAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGA > 1:237636/1‑126 CGTGGTTAGCGAAAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCAAAATTAAGCATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGATGCTTTTAGCTACGGCACTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3333510‑3333655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcactgtAAACGACCAAAAGTAAACCAACAATTAACAGTGCCGTAGCTAAAAGCATCTAACGTCCTTTCTTCAGGTATACTCGCCGGTCCGCTGAAGATTTTCAGAAAGCCGTAACGGATGCTTAATTTTGACTTTATGCGGCT < NZ_CP009273/3333682‑3333546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |