New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 4591405	60 (0.940)	3 (0.050)	3/238	5.6	4.7%	intergenic (‑71/+36)	dnaT/yjjB	primosomal protein DnaT/threonine/serine exporter
	?	NZ_CP009273	4591410 =	61 (0.960)					intergenic (‑76/+31)	dnaT/yjjB	primosomal protein DnaT/threonine/serine exporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTTTGGTGATCGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTGTAAGAAAGTTGGTTAA  >  NZ_CP009273/4591269‑4591539                                                                                                                                         |                                                                                                                                       ggTTTGGTGATCGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAGCGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      <  2:594129/139‑1 (MQ=255) ggTTTGGTGATCGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      <  2:78813/139‑1 (MQ=255)   tttGGTGATCGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTg                                                                                                                                    >  2:166627/1‑139 (MQ=255)          aTCGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtctctc                                                                                                                              <  2:49400/138‑1 (MQ=255)           tCGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCAt                                                                                                                            <  1:655228/139‑1 (MQ=255)            cGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATc                                                                                                                           >  2:191277/1‑139 (MQ=255)             gtgtACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATcc                                                                                                                          <  2:1263170/139‑1 (MQ=255)                tACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCgt                                                                                                                        <  2:396347/138‑1 (MQ=255)                     gggCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCt                                                                                                                   >  1:823/1‑138 (MQ=255)                      ggCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCtt                                                                                                                  >  2:926948/1‑138 (MQ=255)                      ggCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCtt                                                                                                                  >  1:480899/1‑138 (MQ=255)                       gCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCtt                                                                                                                  >  2:148676/1‑137 (MQ=255)                        cGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATATTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      >  2:924918/1‑116 (MQ=255)                        cGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATATTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      <  1:924918/116‑1 (MQ=255)                        cGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATcc                                                                                                                          <  2:410400/128‑1 (MQ=255)                        cGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATcc                                                                                                                          >  1:410400/1‑128 (MQ=255)                         gTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGc                                                                                                              >  2:781017/1‑139 (MQ=255)                                   acgacgTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGG‑‑‑‑CTCTCATCCGTGTGCTTAAGCGAGGCAATTTtata                                                                                                >  1:765624/1‑139 (MQ=255)                                    cgacgTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAAttt                                                                                                    >  1:84744/1‑138 (MQ=255)                                    cgacgTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGA‑‑‑‑GTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATAc                                                                                               >  2:671619/1‑139 (MQ=255)                                        gTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATAc                                                                                               >  1:571659/1‑139 (MQ=255)                                                   aaaCTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGTAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCt                                                                                    >  1:594601/1‑139 (MQ=255)                                                   aaaCTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCt                                                                                    <  2:813158/139‑1 (MQ=255)                                                     aCTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTg                                                                                  <  1:282660/139‑1 (MQ=255)                                                         tGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCgg                                                                               >  1:231741/1‑138 (MQ=255)                                                           gAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTAc                                                                            <  1:801621/139‑1 (MQ=255)                                                            aaGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGA‑‑‑‑GTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCa                                                                       <  1:671619/139‑1 (MQ=255)                                                               aCATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAAcc                                                                        <  2:1220494/139‑1 (MQ=255)                                                                cATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTAc                                                                            >  1:476546/1‑134 (MQ=255)                                                                cATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTAc                                                                            <  2:476546/134‑1 (MQ=255)                                                                cATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCa                                                                       <  2:1174392/139‑1 (MQ=255)                                                                 aTACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      >  1:457293/1‑75 (MQ=255)                                                                 aTACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      <  2:457293/75‑1 (MQ=255)                                                                         tctcAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCa                                                                       <  1:774034/130‑1 (MQ=255)                                                                         tctcAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCa                                                                       >  2:774034/1‑130 (MQ=255)                                                                         tctcAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAg                                                               >  2:55951/1‑138 (MQ=255)                                                                          ctcAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAgg                                                              >  2:1180693/1‑138 (MQ=255)                                                                          ctcAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAgg                                                              <  2:823/138‑1 (MQ=255)                                                                             aaaTATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAAt                                                           <  1:860990/138‑1 (MQ=255)                                                                                  tGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGaaa                                                      <  1:547336/138‑1 (MQ=255)                                                                                  tGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGaaa                                                      <  2:594601/138‑1 (MQ=255)                                                                                      aCGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCg                                                 <  1:1180693/139‑1 (MQ=255)                                                                                      aCGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCg                                                 <  1:166627/139‑1 (MQ=255)                                                                                       cGATGATCGAGCAGGGTTATTACGTTTATAGGAATTCACGGAGGAGAGGAGGCTGTCCTTCATCAGTTTGCTTAAGCGAGCCAATTTTATACGCGAGGGCGCTTGCGGCAGAACCATAATCCAGGAATGGAAAGACCGa                                                >  2:1091038/1‑139 (MQ=255)                                                                                       cGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGAAAAGACCGa                                                >  1:707201/1‑139 (MQ=255)                                                                                            aaCGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      <  1:871262/48‑1 (MQ=255)                                                                                            aaCGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGc                                                                                                                                      >  2:871262/1‑48 (MQ=255)                                                                                            aaCGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGAt                                           <  1:148676/139‑1 (MQ=255)                                                                                                    gggAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCAc                                    >  2:442211/1‑138 (MQ=255)                                                                                                    gggAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCC‑GGAATGGAAAGACCGATGGATAACGCAcc                                   >  1:940107/1‑138 (MQ=255)                                                                                                         aTAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTa                                                                             >  1:821366/1‑92 (MQ=255)                                                                                                         aTAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTa                                                                             <  2:821366/92‑1 (MQ=255)                                                                                                           aaCTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATc                            >  1:634192/1‑139 (MQ=255)                                                                                                                ttATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAAc                                                                         >  2:136981/1‑89 (MQ=255)                                                                                                                ttATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAAc                                                                         <  1:136981/89‑1 (MQ=255)                                                                                                                 tataGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGa                       <  2:480899/138‑1 (MQ=255)                                                                                                                        acacacGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTGt                 >  1:1092395/1‑137 (MQ=255)                                                                                                                           cacGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTGTAAGaa            <  2:777399/139‑1 (MQ=255)                                                                                                                           cacGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTGTAAGaa            <  1:781017/139‑1 (MQ=255)                                                                                                                              ggaggaGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTGTAAGAAAGt         >  1:779511/1‑139 (MQ=255)                                                                                                                                aggagaggagGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCa                                                                <  1:730265/82‑1 (MQ=255)                                                                                                                                aggagaggagGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCa                                                                >  2:730265/1‑82 (MQ=255)                                                                                                                                     aggaggCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTGTAAGAAAGTTGGTTaa  >  2:648379/1‑139 (MQ=255)                                                                                                                                         |                                                                                                                                       GGTTTGGTGATCGTGTACCAGGGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTGTAAGAAAGTTGGTTAA  >  NZ_CP009273/4591269‑4591539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.