New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 604808	58 (0.910)	3 (0.050)	3/230	5.5	5.6%	intergenic (+175/+107)	BW25113_RS03025/entD	IS4‑like element IS421 family transposase/enterobactin synthase subunit EntD
	?	NZ_CP009273	= 2369309	45 (0.740)					coding (133/963 nt)	menC	o‑succinylbenzoate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGC  >  NZ_CP009273/2369171‑2369439                                                                                                                                           |                                                                                                                                   aTGCGCAGCTTACGACCAAGGCCACGGAAGGCATATGCGGTAGCGCGCAGTCGCCTGCGAACCAGTTATTTACCCAAGCGAGCAGCAGACTTTGCGCTTCTTCCCAGATTTCCTGACTGAAGGCCGGCAGTGGGGAAAt                                                                                                                                    <  2:40890/139‑1 (MQ=255) aTGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTATCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAt                                                                                                                                    <  1:910166/139‑1 (MQ=255) aTGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAt                                                                                                                                    <  1:11244/139‑1 (MQ=255)  tGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAtc                                                                                                                                   <  2:1288043/139‑1 (MQ=255)        gCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAtc                                                                                                                                   >  2:298241/1‑133 (MQ=255)        gCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAtc                                                                                                                                   <  1:298241/133‑1 (MQ=255)            aCGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTccccc                                                                                                                             <  1:1034373/135‑1 (MQ=255)            aCGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTccccc                                                                                                                             >  2:1034373/1‑135 (MQ=255)            aCGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCAcc                                                                                                                         >  1:826553/1‑139 (MQ=255)                     gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCt                                                                                                                <  1:555318/139‑1 (MQ=255)                     gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCt                                                                                                                <  2:571469/139‑1 (MQ=255)                     gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCt                                                                                                                <  2:1274649/139‑1 (MQ=255)                     gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCt                                                                                                                <  2:1269191/139‑1 (MQ=255)                        aCGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAtc                                                                                                                                   <  1:61811/117‑1 (MQ=255)                        aCGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAtc                                                                                                                                   >  2:61811/1‑117 (MQ=255)                               gCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                      >  1:955150/1‑139 (MQ=255)                                cATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                      >  2:496079/1‑138 (MQ=255)                                 aTCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCa                                                                                                    <  2:470668/139‑1 (MQ=255)                                      cGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGc                                                                                                 <  2:826553/137‑1 (MQ=255)                                      cGGTAGCTCGCAATCGCCTGCCAGCCAGGTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCaa                                                                                               <  2:703053/139‑1 (MQ=255)                                              cGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAg                                                                                       >  2:299951/1‑139 (MQ=255)                                                cAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGcc                                                                                     >  1:880898/1‑139 (MQ=255)                                                 aaTCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGccc                                                                                    >  1:99004/1‑139 (MQ=255)                                                      ccTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTcgc                                                                               >  1:911572/1‑139 (MQ=255)                                                                  ttATTTCCCCAGGCAAGCAGCCCCCTTTGCGCCTCTTCCCAGTTTTCCTGACTGAACCCCGGCAGTGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAAcc                                                                   <  2:860309/139‑1 (MQ=255)                                                                            aGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCa                                                                                                <  1:380685/100‑1 (MQ=255)                                                                            aGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCa                                                                                                >  2:380685/1‑100 (MQ=255)                                                                            aGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTcgcg                                                         >  1:960093/1‑139 (MQ=255)                                                                            aGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTcgcg                                                         >  2:452884/1‑139 (MQ=255)                                                                                      cacaCTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAaccacc                                               >  1:957263/1‑139 (MQ=255)                                                                                          ttttGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCCCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACACCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcg                                           <  1:606645/138‑1 (MQ=255)                                                                                             tGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                      >  1:9845/1‑77 (MQ=255)                                                                                             tGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                      <  2:9845/77‑1 (MQ=255)                                                                                             tGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgcg                                         <  1:452884/138‑1 (MQ=255)                                                                                             tGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGt                                        >  1:1290650/1‑139 (MQ=255)                                                                                                    ctTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGt                                                             >  2:123271/1‑111 (MQ=255)                                                                                                    ctTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGt                                                             <  1:123271/111‑1 (MQ=255)                                                                                                     ttCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTcgc                                                                               <  2:853696/92‑1 (MQ=255)                                                                                                     ttCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTcgc                                                                               >  1:853696/1‑92 (MQ=255)                                                                                                     ttCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTcgcg                                                         <  2:294019/114‑1 (MQ=255)                                                                                                     ttCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTcgcg                                                         >  1:294019/1‑114 (MQ=255)                                                                                                     ttCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATgggg                                >  2:1110735/1‑139 (MQ=255)                                                                                                       cccAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGGGGGTTTTTAACCGCCTg                                                              <  1:693314/107‑1 (MQ=255)                                                                                                       cccAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTg                                                              >  2:693314/1‑107 (MQ=255)                                                                                                            ttttCCTGGCGGAGGCCGGGCAGTGGGGAAGTCTCCCCCCCCCTGTCGCGCACGCCTTGACGCGGGCAAACATGCAGCCCGTGGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGcc                         <  2:893070/138‑1 (MQ=255)                                                                                                            gTTTCCTGACTGAAGCCCGGCAGGGGGGAGATCCCCCCCCCCCCTCCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGcc                         <  2:1020625/139‑1 (MQ=255)                                                                                                            gTTTCCTGACGGAGGCCGGGCAGTGGGGAGATCCCCCCCCCCCCTTCGCGCTCGCCTTCCCGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGcc                         <  2:955150/139‑1 (MQ=255)                                                                                                               tCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGc                      >  2:272555/1‑139 (MQ=255)                                                                                                               gccTGACTGAAGCCCGGCAGTGGGGAGACCGCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATGCAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAg                       <  1:985830/137‑1 (MQ=255)                                                                                                                        aaGCCCGGCAGTGGGGCGATCTCCCCCCACCCTTTGCGCTCGCCTTCACGCCGGGCAACATACAGCCCGTCGCGGGGTTTTAACCGCCCGTCGCGGAGAACCACCCCCGGGTCCATGGGGATCTGCCAGCGGGATACCt             >  2:985830/1‑139 (MQ=255)                                                                                                                             cGGCAGTGGGGAGATCTCCCCCCCCCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgcg        <  1:1110735/139‑1 (MQ=255)                                                                                                                             cGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgcg        <  2:1290650/139‑1 (MQ=255)                                                                                                                                   tGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGc  >  2:609715/1‑139 (MQ=255)                                                                                                                                           |                                                                                                                                   ATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGC  >  NZ_CP009273/2369171‑2369439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.