Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	1,762,852	0	T	C	56.1%	15.0 / 119.0	82	T31A (ACG→GCG)	ydiJ	FAD‑binding and (Fe‑S)‑binding domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (17/19);  new base C (22/24);  total (39/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CGTTCCTGCGCGGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATGTAGGTCGATACAC  >  NZ_CP009273/1762719‑1762985                                                                                                                                      |                                                                                                                                      cGTTCCTGCGCGGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGc                                                                                                                                  <  2:1093673/139‑1 (MQ=255) cGTTCCTGCGCGGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGc                                                                                                                                  >  2:1251404/1‑139 (MQ=255)      cTGCGCGGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGt                                                                                                                              >  1:597765/1‑138 (MQ=255)      cTGCGCGGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGt                                                                                                                              <  2:36672/138‑1 (MQ=255)      cTGCGCGGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGT‑AATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTa                                                                                                                             >  2:66917/1‑138 (MQ=255)           cgGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAAcc                                                                                                                        >  2:29129/1‑139 (MQ=255)              cAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCttg                                                                                                                     >  1:381348/1‑139 (MQ=255)               aaGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCttgt                                                                                                                    <  2:480274/139‑1 (MQ=255)               aaGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCttgt                                                                                                                    <  2:621900/139‑1 (MQ=255)                      gCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCttg                                                                                                                     <  2:477771/131‑1 (MQ=255)                      gCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCttg                                                                                                                     >  1:477771/1‑131 (MQ=255)                      gCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTc                                                                                                               >  2:340472/1‑137 (MQ=255)                      gCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCAACGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTc                                                                                                               >  2:689314/1‑137 (MQ=255)                        gATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCttgt                                                                                                                    >  1:1086189/1‑130 (MQ=255)                        gATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCttgt                                                                                                                    <  2:1086189/130‑1 (MQ=255)                               gcCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCa                                                                                                    <  2:1072335/139‑1 (MQ=255)                                     tCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAAt                                                                                              >  2:768009/1‑139 (MQ=255)                                         cGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAg                                                                                          >  1:1273439/1‑139 (MQ=255)                                          ggTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGc                                                                                         <  2:1146286/139‑1 (MQ=255)                                           gTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCg                                                                                                                                   <  2:1122671/96‑1 (MQ=255)                                           gTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCg                                                                                                                                   >  1:1122671/1‑96 (MQ=255)                                            ttGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCAc                                                                                       <  2:34184/139‑1 (MQ=255)                                               aaCGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCAc                                                                                       >  2:1161755/1‑136 (MQ=255)                                               aaCGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCAc                                                                                       <  1:1161755/136‑1 (MQ=255)                                                 cgcgGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGtt                                                                                  >  1:1022713/1‑139 (MQ=255)                                                              ccGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCggg                                                                     >  2:881613/1‑139 (MQ=255)                                                              ccGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCggg                                                                     <  2:165966/139‑1 (MQ=255)                                                                gCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTg                                                                   <  1:255816/139‑1 (MQ=255)                                                                    cGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTg                                                               >  1:200663/1‑139 (MQ=255)                                                                       ggAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGa                                                            <  2:117743/139‑1 (MQ=255)                                                                           aaGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGCCGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATc                                                        >  1:769270/1‑139 (MQ=255)                                                                           aaGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATc                                                        >  2:791956/1‑139 (MQ=255)                                                                              ttGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCtgt                                                     <  2:1056980/139‑1 (MQ=255)                                                                                ggTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGa                                                                                >  1:549074/1‑110 (MQ=255)                                                                                ggTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGa                                                                                <  2:549074/110‑1 (MQ=255)                                                                                 gTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTgg                                                   <  2:1011588/138‑1 (MQ=255)                                                                                 gTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTgg                                                   <  1:477817/138‑1 (MQ=255)                                                                                    aaTACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATc                                               <  2:1154346/139‑1 (MQ=255)                                                                                    aaTACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATc                                               <  2:967726/139‑1 (MQ=255)                                                                                     aTACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCa                                              <  1:487512/139‑1 (MQ=255)                                                                                      tACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCAt                                             <  2:1022713/139‑1 (MQ=255)                                                                                      tACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCAt                                             <  1:986468/139‑1 (MQ=255)                                                                                        cTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATta                                           >  1:712601/1‑139 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTatat                                        >  2:357688/1‑139 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTatat                                        <  1:881613/139‑1 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTatat                                        <  2:381348/139‑1 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCa                                                                                        >  1:199596/1‑91 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCa                                                                                        <  2:199596/91‑1 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACTAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTatat                                        >  2:538918/1‑139 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTatat                                        >  2:1111298/1‑139 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTatat                                        >  1:1094459/1‑139 (MQ=255)                                                                                           ttgtCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTatat                                        >  1:784387/1‑139 (MQ=255)                                                                                             gtcggtcgACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATAtt                                       >  1:778210/1‑138 (MQ=255)                                                                                                ggtcgACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGAcc                                   <  2:190517/139‑1 (MQ=255)                                                                                                ggtcgACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAac                                                                              >  2:957042/1‑96 (MQ=255)                                                                                                ggtcgACATTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAac                                                                              <  1:957042/96‑1 (MQ=255)                                                                                                     aCATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTc                              >  2:1114169/1‑139 (MQ=255)                                                                                                       aTTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCt                            <  1:66917/139‑1 (MQ=255)                                                                                                       aTTGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCt                            <  2:887137/139‑1 (MQ=255)                                                                                                        ttGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTg                           <  1:791602/139‑1 (MQ=255)                                                                                                        ttGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTg                           >  2:1151924/1‑139 (MQ=255)                                                                                                        ttGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGACATCTGTGGAATCATTATATTGACCCTTTCCTg                           <  1:1111298/139‑1 (MQ=255)                                                                                                        ttGTCAGACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTg                           <  2:1273439/139‑1 (MQ=255)                                                                                                           tCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGTCCCTTTCCTGCg                         <  1:1175058/138‑1 (MQ=255)                                                                                                           tCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCg                         <  2:597765/138‑1 (MQ=255)                                                                                                              gACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCt                     <  1:534156/139‑1 (MQ=255)                                                                                                              gACGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCt                     <  2:29840/139‑1 (MQ=255)                                                                                                                cGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCg                         <  2:1229129/133‑1 (MQ=255)                                                                                                                cGATCGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCg                         >  1:1229129/1‑133 (MQ=255)                                                                                                                  aTCGGCATAACTTGTCGCCGCATCGCCGGTACAACCTTGTTGCTCCAGCTCTTGCAAAAAATTACGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGa                 >  2:433481/1‑139 (MQ=255)                                                                                                                    cGGCATAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATg               >  2:852263/1‑139 (MQ=255)                                                                                                                     ggCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAAt                                                         >  2:16738/1‑96 (MQ=255)                                                                                                                     ggCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAAt                                                         <  1:16738/96‑1 (MQ=255)                                                                                                                         tAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGc                                                                  <  1:814969/83‑1 (MQ=255)                                                                                                                         tAACTTGTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGc                                                                  >  2:814969/1‑83 (MQ=255)                                                                                                                           aCTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGGTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATGTAGGTCg        <  1:689314/139‑1 (MQ=255)                                                                                                                               gTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATGTAGGTCGATa     >  2:635467/1‑138 (MQ=255)                                                                                                                               gTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCAc                                                                                       <  1:79417/56‑1 (MQ=255)                                                                                                                               gTCGCCGCATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCAc                                                                                       >  2:79417/1‑56 (MQ=255)                                                                                                                                 cgccgcATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGt                       <  2:961133/118‑1 (MQ=255)                                                                                                                                 cgccgcATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGt                       >  1:961133/1‑118 (MQ=255)                                                                                                                                 cgccgcATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATGTAGGTCGATacac  >  1:23602/1‑139 (MQ=255)                                                                                                                                 cGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGt                       <  2:685127/118‑1 (MQ=255)                                                                                                                                 cGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGt                       >  1:685127/1‑118 (MQ=255)                                                                                                                                 cGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATGTAGGTCGATacac  >  1:713266/1‑139 (MQ=255)                                                                                                                                      tATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATg               >  1:106035/1‑121 (MQ=255)                                                                                                                                      tATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATg               <  2:106035/121‑1 (MQ=255)                                                                                                                                      |                                                                                                                                      CGTTCCTGCGCGGCAAGACGGGCGATCAGCGCCACATCTGCGGTTGAACGCGGAAATACCACCGCATCGGGGAGAAGTTGGTAAATACTGTTGTCGGTCGACATTGTCAGACGATCGGCATAACTTGTCGCCGTATCGCCGGTAAAACCTTGTTGCTCCAGCTCTTGCAAAAAATTAAGCACCAGTTGAACGACGCCGGGTGCCTGGGAAATCTGTGGAATCATTATATTGACCCTTTCCTGCGGTCTGTGATGTAGGTCGATACAC  >  NZ_CP009273/1762719‑1762985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑