Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 1,547,080 | G→A | intergenic (‑141/+5) | yddM ← / ← adhP | HigA family addiction module antitoxin/alcohol dehydrogenase AdhP |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,547,080 | 0 | G | A | 98.6% | 261.0 / ‑4.4 | 69 | intergenic (‑141/+5) | yddM/adhP | HigA family addiction module antitoxin/alcohol dehydrogenase AdhP |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (41/27); total (42/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 |
TTACTCTCAGTAGCGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGGCCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTACCTTCGGCGGCAAACTGGA > NZ_CP009273/1546948‑1547215 | ttACTCTCAGTAGCGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACctct > 1:33268/1‑138 (MQ=255) ctctCAGTAGCGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAg < 2:767228/138‑1 (MQ=255) ctcAGTAGCGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGa > 1:320006/1‑139 (MQ=255) tcAGTAGCGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGAc > 2:39060/1‑139 (MQ=255) aGTAGCGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACgg < 2:257461/139‑1 (MQ=255) cGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACgg < 2:238670/134‑1 (MQ=255) cGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACgg > 1:238670/1‑134 (MQ=255) ttCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAaatcaa > 1:222109/1‑139 (MQ=255) cTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACgg < 2:1176902/129‑1 (MQ=255) cTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACgg > 1:1176902/1‑129 (MQ=255) cTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAatcaatca > 2:993704/1‑139 (MQ=255) cTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAatcaatca > 2:634127/1‑139 (MQ=255) ggAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCgg > 2:743080/1‑139 (MQ=255) tATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGa > 2:333030/1‑139 (MQ=255) aTCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGAt > 2:1191842/1‑139 (MQ=255) attGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGcc > 1:713597/1‑139 (MQ=255) ttGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCct < 2:713597/139‑1 (MQ=255) gTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAaatcaat < 1:844617/112‑1 (MQ=255) gTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAaatcaat > 2:844617/1‑112 (MQ=255) gTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCcttc > 2:1062681/1‑139 (MQ=255) gTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCcttc > 2:893493/1‑139 (MQ=255) gTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCcttc > 1:1271694/1‑139 (MQ=255) cttcctACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCttcttc < 1:444061/138‑1 (MQ=255) cttcctACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCttcttc < 1:1062681/138‑1 (MQ=255) tcctACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAt > 2:334664/1‑139 (MQ=255) tcctACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAt > 2:1134098/1‑139 (MQ=255) tcctACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAt > 2:741628/1‑139 (MQ=255) cctACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAt < 1:1154319/138‑1 (MQ=255) ctACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAtct > 1:1056360/1‑139 (MQ=255) cGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTa > 2:810396/1‑86 (MQ=255) cGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTa < 1:810396/86‑1 (MQ=255) aacaaTAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTaa < 1:333030/139‑1 (MQ=255) caaTAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATTGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACAATGCGGCCACGGATTTTGCCTTCTTCCAt > 2:1103035/1‑129 (MQ=255) caaTAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAt < 1:1103035/129‑1 (MQ=255) caaTAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTa > 1:395433/1‑136 (MQ=255) aataatCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGa < 2:320006/139‑1 (MQ=255) ttAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGAt > 2:1072394/1‑139 (MQ=255) tAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGAt < 2:1056360/138‑1 (MQ=255) tAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATg > 1:272936/1‑139 (MQ=255) gagaGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACg > 1:1092232/1‑137 (MQ=255) agTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGa > 1:183353/1‑109 (MQ=255) agTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGa < 2:183353/109‑1 (MQ=255) tgtgCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGc > 2:518728/1‑138 (MQ=255) tgtgCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGAGATGATGTCCGCNAANg > 2:183551/1‑128 (MQ=255) tgtgCGATGCTGCGACCCGAACATAGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGc > 2:176075/1‑138 (MQ=255) tgCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGAc > 1:897849/1‑139 (MQ=255) cGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACtt < 2:837546/139‑1 (MQ=255) ctgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGc < 1:993704/139‑1 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAtct > 2:260519/1‑88 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAtct < 1:260519/88‑1 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCg < 2:1253498/112‑1 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCg > 1:1253498/1‑112 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGca > 1:779090/1‑139 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGca > 1:240517/1‑139 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGc < 1:635950/138‑1 (MQ=255) tgcGACCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGc > 2:635950/1‑138 (MQ=255) aCCCGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGcaccac > 2:319123/1‑139 (MQ=255) cGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATg < 1:956160/53‑1 (MQ=255) cGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATg > 2:956160/1‑53 (MQ=255) cGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCgg < 2:256487/130‑1 (MQ=255) cGAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCgg > 1:256487/1‑130 (MQ=255) gAACATGGCAGTCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTa < 2:897849/139‑1 (MQ=255) tCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAt < 2:546290/67‑1 (MQ=255) tCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCAt > 1:546290/1‑67 (MQ=255) tCGCAGCAAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTACCTTcggcgg > 2:1041292/1‑138 (MQ=255) agcaAAGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTACCTTCGGCGGCAAAc < 1:1041292/139‑1 (MQ=255) aaGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTACCTTCGGCGGCAAACTGGa < 2:395433/139‑1 (MQ=255) aaGACCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTACCTTCGGCGGCAAACTGGa < 1:334664/139‑1 (MQ=255) aGGCCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTACCTTCGGCGGCAAACTgg > 2:702598/1‑137 (MQ=255) | TTACTCTCAGTAGCGTTCCTTCACTGGGAACACTATCATTATTGTTCCTTCCTACGCAACAATAATCCATTTAGCCATTTCATGTTGGAGAGTGTGCGATGCTGCGACCCGAACATGGCAGTCGCAGCAAAGGCCTCTTAGTGACGGAAATCAATCACCATGCGGCCACGGATTTTGCCTTCTTCCATCTCAGTAAAGATGGTGTTGATGTCCGCTAACGGACGCAGGGCGACTTTCGGCACCACTTTACCTTCGGCGGCAAACTGGA > NZ_CP009273/1546948‑1547215 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |