Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 1,579,503 A→G V414A (GTC→GCC)  ydeP ← acid resistance putative oxidoreductase YdeP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,579,5030AG100.0% 328.5 / NA 90V414A (GTC→GCC) ydePacid resistance putative oxidoreductase YdeP
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (42/48);  total (42/48)

ATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTGGGTACCATGTTCGTGCTGAGT  >  NZ_CP009273/1579369‑1579636
                                                                                                                                      |                                                                                                                                     
aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGt                                                                                                                                   >  1:266263/1‑139 (MQ=255)
      gAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCgg                                                                                                                               <  1:591775/137‑1 (MQ=255)
      gAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCgg                                                                                                                               <  2:275750/137‑1 (MQ=255)
      gAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCAGAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCgg                                                                                                                               <  1:632837/137‑1 (MQ=255)
       aGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCg                                                                                                                            <  1:538041/139‑1 (MQ=255)
         ccTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  2:374582/139‑1 (MQ=255)
         ccTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  1:783694/139‑1 (MQ=255)
         ccTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  2:610640/139‑1 (MQ=255)
             cctcGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:503800/134‑1 (MQ=255)
             ccccGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:591441/137‑1 (MQ=255)
             ccccGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  1:34007/137‑1 (MQ=255)
             ccccGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:183981/137‑1 (MQ=255)
             ccccGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:129822/137‑1 (MQ=255)
             ccccGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:839873/137‑1 (MQ=255)
             ccccGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:1099313/137‑1 (MQ=255)
                  tACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCTGTCCCCCTGCACAt                                                                                                                  >  2:748068/1‑138 (MQ=255)
                  tACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCg                                                                                                                            <  2:413929/128‑1 (MQ=255)
                  tACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCg                                                                                                                            >  1:413929/1‑128 (MQ=255)
                  tACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACAt                                                                                                                  >  1:852268/1‑138 (MQ=255)
                  tACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGGCGCCCTGTACAt                                                                                                                  >  1:153147/1‑138 (MQ=255)
                  tACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCCGGCGCCCCGttaat                                                                                                                  >  2:647816/1‑134 (MQ=255)
                      tatTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTagag                                                                                                             <  1:388610/139‑1 (MQ=255)
                       atTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  1:243235/125‑1 (MQ=255)
                       atTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          >  2:243235/1‑125 (MQ=255)
                       atTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTAAATTagagg                                                                                                            >  1:327663/1‑138 (MQ=255)
                          gcttgcATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTAGCCCCGCACATTTGAgtggc                                                                                                         >  2:39858/1‑137 (MQ=255)
                           cttgcATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTTGGTCGCCCTGTTCATTTGAgggttc                                                                                                        >  2:1034110/1‑137 (MQ=255)
                             tgcATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCAc                                                                                                      >  1:1208600/1‑139 (MQ=255)
                             tgcATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGGCGCCCTGTACAATAGAGTGTcccc                                                                                                      >  2:181289/1‑137 (MQ=255)
                               cATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACcggcgg                                                                                                                                    >  2:1091389/1‑107 (MQ=255)
                               cATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACcggcgg                                                                                                                                    <  1:1091389/107‑1 (MQ=255)
                               cATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  1:342217/119‑1 (MQ=255)
                               cATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        >  2:342217/1‑119 (MQ=255)
                                aTGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTa                                                                                                   <  2:371146/139‑1 (MQ=255)
                                   cTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGGCGCCCCGTACATTAGAGGGTCCCCGTAGTg                                                                                                >  1:543731/1‑139 (MQ=255)
                                             cagcaTGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATAcc                                                                                      <  2:852268/139‑1 (MQ=255)
                                                 aggTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCa                                                                                  <  1:1169954/137‑1 (MQ=255)
                                                         gTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCCCGTAGTGGGCAGATACCCGCACCAGGCtt                                                                          >  2:400050/1‑139 (MQ=255)
                                                          tGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTg                                                                         <  1:748068/139‑1 (MQ=255)
                                                              tGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  2:294940/86‑1 (MQ=255)
                                                              tGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  1:75370/88‑1 (MQ=255)
                                                              tGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTagag                                                                                                             <  1:77500/99‑1 (MQ=255)
                                                              tGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTagag                                                                                                             >  2:77500/1‑99 (MQ=255)
                                                              tGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCCCCCt                                                                                                                        >  2:75370/1‑88 (MQ=255)
                                                              tGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGGCCCCCCGTACATTAGAGTGTTCACGTAGTGGGGAGATACCCCCCCCAGGGTTGccct                                                                     >  2:1169954/1‑137 (MQ=255)
                                                              tGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCCGTCGcc                                                                                                                          >  1:294940/1‑86 (MQ=255)
                                                                    ggggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTTGGGCGCCCCGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTTCCAATGTTAc                                                               >  1:192130/1‑139 (MQ=255)
                                                                    ggggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  2:995828/80‑1 (MQ=255)
                                                                    ggggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          >  1:995828/1‑80 (MQ=255)
                                                                     gggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  2:84362/79‑1 (MQ=255)
                                                                     gggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          >  1:84362/1‑79 (MQ=255)
                                                                     gggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCa                                                                                            <  1:823716/109‑1 (MQ=255)
                                                                     gggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCa                                                                                            >  2:823716/1‑109 (MQ=255)
                                                                     gggTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTAc                                                               <  1:231739/138‑1 (MQ=255)
                                                                          aaGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGGCGCCCTGTACATTAGAGTGTCCCCGTAGTGGGCAGATAACCGCACCAGGCTTGCCAATGTTACCtttta                                                         >  1:152268/1‑137 (MQ=255)
                                                                           aGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          >  2:654112/1‑73 (MQ=255)
                                                                           aGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGcc                                                                                                                          <  1:654112/73‑1 (MQ=255)
                                                                           aGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTtcat                                                        >  1:521628/1‑139 (MQ=255)
                                                                                tAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCCATGTTACCTTTCATCAAc                                                    >  1:797178/1‑138 (MQ=255)
                                                                                 aGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:671975/69‑1 (MQ=255)
                                                                                 aGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        >  1:671975/1‑69 (MQ=255)
                                                                                 aGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAAcag                                                  >  1:155307/1‑139 (MQ=255)
                                                                                     cTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTTGGGCGCCCt                                                                                                                        >  1:1165550/1‑65 (MQ=255)
                                                                                     cTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCt                                                                                                                        <  2:1165550/65‑1 (MQ=255)
                                                                                        aCCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCCGTACATTAGAGTGTCCACGTAGGGGGGAGATATCCCCACCCGGCTTGCCAATGTTTCCTTTCCTCCACAGCAGATTg                                           >  1:1186999/1‑139 (MQ=255)
                                                                                          ccAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGAc                                         <  1:1034110/139‑1 (MQ=255)
                                                                                           cAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGAcc                                        <  1:752422/139‑1 (MQ=255)
                                                                                            aGACGACCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCa                                       <  1:473269/139‑1 (MQ=255)
                                                                                             gACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAg                                      <  2:797178/139‑1 (MQ=255)
                                                                                             gACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAg                                      <  1:647816/139‑1 (MQ=255)
                                                                                              aCGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGt                                     <  2:438896/139‑1 (MQ=255)
                                                                                                  gCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCCATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCt                                 >  1:1275726/1‑139 (MQ=255)
                                                                                                  gCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTg                                   <  2:79918/137‑1 (MQ=255)
                                                                                                  gCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTg                                   >  1:79918/1‑137 (MQ=255)
                                                                                                  gCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTAACTTTCATCAACAGCAGATTGACCAGTTGCt                                 >  1:1270193/1‑139 (MQ=255)
                                                                                                  gCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGCTTGGGCGCCCTGTACAATAGAGGGTCCCCGTAATGGGGAGAGACCCGCACCCGGCTTTCCAATGTTACCTTTCATCAAAAGAAGATTGGCCCGGTGCt                                 >  2:841719/1‑139 (MQ=255)
                                                                                                    cAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGt                               <  2:1270193/139‑1 (MQ=255)
                                                                                                    cAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGt                               <  2:1208600/139‑1 (MQ=255)
                                                                                                    cAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGt                               <  1:908836/139‑1 (MQ=255)
                                                                                                    cAGAAACTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGGCGCCCCGTACATTAGAGGGTCCACGTAGTGGGGAGAGAACCGCACCAGGCTTGCCAATGTTACCTTTTATCAACAGCCGATTTAACCGGTGCTg                                >  1:632807/1‑138 (MQ=255)
                                                                                                        aaCTCTGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGt                           <  1:400050/139‑1 (MQ=255)
                                                                                                             tGCAGACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCCGATTGACCAGTTGCTGTACGTTCTgg                      >  1:804088/1‑139 (MQ=255)
                                                                                                                 gaaggTTTCTCGGTTATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTGGGTAc                  <  2:1190024/136‑1 (MQ=255)
                                                                                                                 gACGGTTTCTCGGTGATACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTGGGTAc                  <  2:521628/139‑1 (MQ=255)
                                                                                                                         ctcGGTGATACCGGCGGTTTTGTCGCCCTGTACATTAGAGGGTCCACGTTGTGGGGAGGTAACCGCACCCGGCTTGCCCAAGTTTACTTTTATTAACAGCAGAATGACCAGGTGCTGTACGTTCTGGGGACCATGtttg          >  2:1031667/1‑137 (MQ=255)
                                                                                                                            ggTGATACCGGCGGTTCGGTCGCCCTGTACATTagag                                                                                                             <  2:560290/37‑1 (MQ=255)
                                                                                                                            ggTGATACCGGCGGTTCGGTCGCCCTGTACATTagag                                                                                                             >  1:560290/1‑37 (MQ=255)
                                                                                                                                aTACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCCATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTTGGTAc                  >  1:292028/1‑124 (MQ=255)
                                                                                                                                aTACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTGGGTAc                  <  2:292028/124‑1 (MQ=255)
                                                                                                                                aTACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTGGGTACCATGTTCGTGCTGAg   >  1:1016475/1‑139 (MQ=255)
                                                                                                                                aTACCGGCGGCTCTGTCGCCCCGTACATTAGAGTGTCCACGAAGTGGGGAGGTACCCGCCCCAAGGTTGCCAATATTAACTTTCATCAAAAGCAGATTGACCAGTTGCTGTACGTTCTGGGTACCATGTTCGTGCTGAg   >  2:31591/1‑139 (MQ=255)
                                                                                                                                 tACCGGCGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTGGGTACCATGTTCGTGCTGAGt  <  1:39858/139‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
ATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTGCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCAGGCTTGCCAATGTTACCTTTCATCAACAGCAGATTGACCAGTTGCTGTACGTTCTGGGTACCATGTTCGTGCTGAGT  >  NZ_CP009273/1579369‑1579636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: