Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 2,018,781 A→G intergenic (+87/‑211) yodD → / → yedP peroxide/acid resistance protein YodD/mannosyl‑3‑phosphoglycerate phosphatase‑related protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092732,018,7810AG100.0% 246.7 / NA 67intergenic (+87/‑211)yodD/yedPperoxide/acid resistance protein YodD/mannosyl‑3‑phosphoglycerate phosphatase‑related protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (30/37);  total (30/37)

AACTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCA  >  NZ_CP009273/2018651‑2018909
                                                                                                                                  |                                                                                                                                
aaCTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          <  2:329591/139‑1 (MQ=255)
aaCTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          <  2:904897/139‑1 (MQ=255)
aaCTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          <  2:1112509/139‑1 (MQ=255)
 aCTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAtg                                                                                                                         <  2:968209/139‑1 (MQ=255)
 aCTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAtg                                                                                                                         <  1:675964/139‑1 (MQ=255)
     gATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATACAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGtt                                                                                                                     >  1:363628/1‑139 (MQ=255)
     gATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAtgtg                                                                                                                       <  2:787361/137‑1 (MQ=255)
     gATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGtt                                                                                                                     >  1:145876/1‑139 (MQ=255)
       tatTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTtca                                                                                                                   <  2:844363/139‑1 (MQ=255)
         ttCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTtcat                                                                                                                  <  2:720143/138‑1 (MQ=255)
           cATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          >  1:153311/1‑128 (MQ=255)
           cATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          <  2:153311/128‑1 (MQ=255)
               aCTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTa                                                                                                           >  1:861976/1‑139 (MQ=255)
                   cAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCg                                                                                                       >  2:228905/1‑139 (MQ=255)
                   cAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCg                                                                                                       >  2:1114763/1‑139 (MQ=255)
                    aGCGTCTCTGGAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAtgtg                                                                                                                       <  2:654926/122‑1 (MQ=255)
                    aGCGTCTCTGGAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAtgtg                                                                                                                       >  1:654926/1‑122 (MQ=255)
                                 tGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCt                                                                                         <  2:64536/139‑1 (MQ=255)
                                   aaTCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGa                                                                                       >  1:250417/1‑139 (MQ=255)
                                   aaTCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGa                                                                                       >  1:41916/1‑139 (MQ=255)
                                       gTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAg                                                                                   <  1:25615/139‑1 (MQ=255)
                                        ttGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAg                                                                                   >  2:1205217/1‑138 (MQ=255)
                                        ttGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAg                                                                                   >  2:1034564/1‑138 (MQ=255)
                                               cacaATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATAtt                                                                           <  2:1173280/139‑1 (MQ=255)
                                               cacaATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATAtt                                                                           <  2:145876/139‑1 (MQ=255)
                                               cacaATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATAtt                                                                           <  1:1114763/139‑1 (MQ=255)
                                               cacaATAAAAAAAGCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATAtt                                                                           <  1:1278833/139‑1 (MQ=255)
                                               cacaAAAAAAAAACCCCGACCCGGAGGGGGCCGGAAGGAAACTGGCTTAAGCAAAAAGCCCTAAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATAtt                                                                           <  1:327250/139‑1 (MQ=255)
                                                  aaTAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGc                                                                        >  2:957031/1‑139 (MQ=255)
                                                       aaaaaTCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCatat                                                                   <  1:451980/139‑1 (MQ=255)
                                                         aaaTCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATatga                                                                 <  2:1177460/139‑1 (MQ=255)
                                                                         ggggTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACtt                                                 <  2:930547/139‑1 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          >  1:835337/1‑63 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          <  2:835337/63‑1 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCt                                                                                         >  1:14621/1‑96 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCt                                                                                         <  2:14621/96‑1 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATAtt                                                                           >  2:1232604/1‑110 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATatgaa                                                                <  1:1068215/121‑1 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATatgaa                                                                >  2:1068215/1‑121 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTaa                                                         >  2:52598/1‑128 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTaa                                                         <  1:52598/128‑1 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTAt                                               >  1:645724/1‑138 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTAt                                               >  1:1227484/1‑138 (MQ=255)
                                                                            gTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTAGCCGCAATTTTTTTCGCTGACAAGAAAATAtt                                                                           <  1:1232604/110‑1 (MQ=255)
                                                                             tCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATg                                              >  1:1229700/1‑138 (MQ=255)
                                                                                 gATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGaa                                            >  2:324462/1‑136 (MQ=255)
                                                                                      aaCTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAAtg                                    <  2:41916/139‑1 (MQ=255)
                                                                                           gCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACg                               >  2:1014966/1‑139 (MQ=255)
                                                                                            cTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          >  2:968297/1‑47 (MQ=255)
                                                                                            cTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGAt                                                                                                                          <  1:968297/47‑1 (MQ=255)
                                                                                            cTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACg                               <  1:957031/138‑1 (MQ=255)
                                                                                                aGCAAGAAGCACTTAAAAAATTCGTTACCACAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGt                          <  2:769416/139‑1 (MQ=255)
                                                                                                aGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGt                          <  2:266535/139‑1 (MQ=255)
                                                                                                aGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGt                          >  2:1279607/1‑139 (MQ=255)
                                                                                                aGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGt                          <  1:1144177/139‑1 (MQ=255)
                                                                                                aGCAAGAAGCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGt                          <  2:861976/139‑1 (MQ=255)
                                                                                                      aagCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGt                          >  2:763607/1‑133 (MQ=255)
                                                                                                      aagCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGt                          <  1:763607/133‑1 (MQ=255)
                                                                                                      aagCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCAcccc                    >  2:1223455/1‑139 (MQ=255)
                                                                                                      aagCACTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCAcccc                    >  1:682411/1‑139 (MQ=255)
                                                                                                          aCTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTtgg                <  1:1014966/139‑1 (MQ=255)
                                                                                                          aCTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTtgg                <  2:1227484/139‑1 (MQ=255)
                                                                                                           cTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTtggt               >  2:110472/1‑139 (MQ=255)
                                                                                                           cTTAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTtggt               >  2:25845/1‑139 (MQ=255)
                                                                                                            ttAAAAAATTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTtggtg              >  1:1213235/1‑139 (MQ=255)
                                                                                                               aaaaaTTCGTTACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGct           <  1:875155/139‑1 (MQ=255)
                                                                                                                        ttACACCAGGGAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCa  <  1:468811/139‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                
AACTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCA  >  NZ_CP009273/2018651‑2018909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: