| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,069,296 | A→G | E346G (GAA→GGA) | BW25113_RS10450 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,069,296 | 0 | A | G | 76.6% | 204.2 / 68.6 | 107 | E346G (GAA→GGA) | BW25113_RS10450 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (11/14); new base G (31/51); total (42/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
CGATTTTCTCGATCGTTGCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGATTCTCATGA > NZ_CP009273/2069159‑2069430 | cGATTTTCTCGATCGTTGCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGaa < 1:869952/139‑1 (MQ=255) gATCGTTGCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGc < 1:67607/139‑1 (MQ=255) gATCGTTGCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGc < 2:1072097/139‑1 (MQ=255) gATCGTTGCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGc < 1:246416/139‑1 (MQ=255) gATCGTTGCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGc < 1:222583/139‑1 (MQ=255) gCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATcc > 1:871409/1‑139 (MQ=255) gCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATc < 2:561227/138‑1 (MQ=255) gCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATc < 2:544747/138‑1 (MQ=255) gCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATc < 2:1120747/138‑1 (MQ=255) cTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCgg < 2:769699/139‑1 (MQ=255) tGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCgg > 1:1184534/1‑138 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa < 2:440005/138‑1 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa < 2:41558/138‑1 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa < 1:1097781/138‑1 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAAt > 2:829212/1‑139 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAAt > 1:933050/1‑139 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGaa < 1:199881/138‑1 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGaa < 1:743022/138‑1 (MQ=255) gACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAAt > 1:613360/1‑139 (MQ=255) gcggTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTa < 2:727551/139‑1 (MQ=255) gcggTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTa < 1:379785/139‑1 (MQ=255) tATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCctctc > 2:1183759/1‑139 (MQ=255) cTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTa < 2:704679/123‑1 (MQ=255) cTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTa > 1:704679/1‑123 (MQ=255) cTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGct < 1:942058/128‑1 (MQ=255) tttCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATc > 1:229937/1‑111 (MQ=255) tttCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATc < 2:229937/111‑1 (MQ=255) tttCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTcg > 1:512245/1‑139 (MQ=255) tttCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTcg > 1:646985/1‑139 (MQ=255) aGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCga < 2:341743/138‑1 (MQ=255) gTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCgaaacaga < 1:1040687/139‑1 (MQ=255) gTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCgaaacag > 2:237589/1‑138 (MQ=255) ccGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCgaaacagaaaca < 2:39884/139‑1 (MQ=255) ccGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCgaaacagaaaca < 2:1023143/139‑1 (MQ=255) tCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAgg < 1:1184873/139‑1 (MQ=255) ttCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTAc < 1:719124/96‑1 (MQ=255) ttCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTAc > 2:719124/1‑96 (MQ=255) ttCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGaaa > 1:721321/1‑139 (MQ=255) ttCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGaaa > 2:913823/1‑139 (MQ=255) tCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTAt > 1:941472/1‑139 (MQ=255) cgggaaTGGGCTCCGAATCTGTCCTCCCGGGGGGTTGACAGAGGTACATCTTGCCCCGGGAAAGAATAAGCCGGGTCCGG‑ATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:335149/134‑1 (MQ=255) cGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGaa > 1:839274/1‑139 (MQ=255) ggggATGAGCTTCGTAGCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:1150622/137‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:721321/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 1:1161280/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:512245/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 1:1255307/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:909849/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:933050/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:941472/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:1184534/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:232008/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 1:660803/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 1:840367/139‑1 (MQ=255) gTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCAGGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:122915/139‑1 (MQ=255) tgaaTGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACg > 2:1089060/4‑139 (MQ=255) ggATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa > 1:1228955/1‑79 (MQ=255) ggATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa < 2:1228955/79‑1 (MQ=255) cGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTacaac < 1:887300/138‑1 (MQ=255) cGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTacaa < 1:237589/137‑1 (MQ=255) tATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGaa < 1:337955/67‑1 (MQ=255) tATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGaa > 2:337955/1‑67 (MQ=255) gtgCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGaa < 1:377385/119‑1 (MQ=255) gtgCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGaa > 2:377385/1‑119 (MQ=255) gtgCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTAt > 1:1135849/1‑139 (MQ=255) cctcctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa < 2:888911/59‑1 (MQ=255) cctcctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa > 1:888911/1‑59 (MQ=255) ctcctGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTcc < 2:1135849/139‑1 (MQ=255) tcctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa < 1:186558/57‑1 (MQ=255) tcctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGaa > 2:186558/1‑57 (MQ=255) cctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCgaaacagaaaca < 2:777882/92‑1 (MQ=255) cctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCgaaacagaaaca > 1:777882/1‑92 (MQ=255) cctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCt > 1:1198742/1‑129 (MQ=255) cctGCGGGCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCt < 2:1198742/129‑1 (MQ=255) tGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATg > 2:1243651/1‑139 (MQ=255) tGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATg > 2:540657/1‑139 (MQ=255) cGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATg < 2:864754/137‑1 (MQ=255) gggCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGct > 2:698861/1‑61 (MQ=255) gggCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGct < 1:698861/61‑1 (MQ=255) gggCTGACAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCaa > 1:681363/1‑139 (MQ=255) tGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTacaa > 2:378857/1‑115 (MQ=255) tGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTacaa < 1:378857/115‑1 (MQ=255) cAGAAGTACATCATGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGaa < 1:783789/139‑1 (MQ=255) gTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTc < 2:839274/139‑1 (MQ=255) atcatGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACt < 1:737848/73‑1 (MQ=255) atcatGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACt > 2:737848/1‑73 (MQ=255) atcatGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCGTTACAACAGCTTTATTTCCGATGCAACGGCGa < 1:1121927/129‑1 (MQ=255) atcatGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGa > 2:1121927/1‑129 (MQ=255) atcatGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCga > 1:1183730/1‑61 (MQ=255) atcatGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCga < 2:1183730/61‑1 (MQ=255) tcatGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGAtt < 2:871409/139‑1 (MQ=255) tcatGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGAtt < 1:301517/139‑1 (MQ=255) tGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGaa < 1:1002660/126‑1 (MQ=255) tGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGaa > 2:1002660/1‑126 (MQ=255) tGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGATtct > 1:365536/1‑138 (MQ=255) tGCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCCTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAAc < 2:380943/89‑1 (MQ=255) tGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGATtct > 1:724811/1‑138 (MQ=255) gCCCCGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGATTCTCa > 2:88350/1‑139 (MQ=255) ccccGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGATTCTCAt > 2:214203/1‑139 (MQ=255) cGGGAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGATTCTCATGa > 1:1283354/1‑138 (MQ=255) | CGATTTTCTCGATCGTTGCCTGGACGGCGGTGACTGGTATCCCTTTTCAGAAGGTCGCCGTTTTGTATCATTCCATCACGTGGATGAGCTTCGTATCTGTGCCTCCTGCGGGCTGACAGAAGTACATCATGCCCCGGAAAATCATAAGCCGGATCCGGAATGGTACTGCTCCTCTCTTTGTCGCGAAACAGAAACACTGTGTCAGGAAATTTATGAACGCCCTTACAACAGCTTTATTTCCGATGCAACGGCGAATGGTCTGATTCTCATGA > NZ_CP009273/2069159‑2069430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |