| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,158,576 | C→T | intergenic (+97/‑94) | baeR → / → yegP | two‑component system response regulator BaeR/YegP family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,158,576 | 0 | C | T | 86.8% | 104.2 / 6.9 | 39 | intergenic (+97/‑94) | baeR/yegP | two‑component system response regulator BaeR/YegP family protein |
| Reads supporting (aligned to +/- strand): ref base C (2/3); new base T (12/21); total (14/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.50e-01 | |||||||||||
GGAAGCCGACGCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGCCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTGGTTTGAACTCAGTAAGAGCAGTGATAAT > NZ_CP009273/2158452‑2158708 | ggAAGCCGACGCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCAt > 2:332567/1‑137 (MQ=255) gCCGACGCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGaaa < 2:392094/139‑1 (MQ=255) ccGACGCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGaaaa > 1:1204829/1‑139 (MQ=255) ccGACGCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGaaaa < 2:166435/139‑1 (MQ=255) aCGCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGCCCTGGCAGGCATCAGAAAATCg > 1:1061015/1‑139 (MQ=255) gCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCt < 1:1001951/139‑1 (MQ=255) ccGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATAc > 2:209052/1‑139 (MQ=255) ccGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATAc > 1:56297/1‑139 (MQ=255) cATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACttt < 2:642639/139‑1 (MQ=255) tAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCgg < 2:802852/138‑1 (MQ=255) tAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACa < 2:1180641/138‑1 (MQ=255) aGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAg < 2:56297/138‑1 (MQ=255) ttAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGt > 2:1248389/1‑139 (MQ=255) gCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGtttt < 2:1123091/139‑1 (MQ=255) gCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGCCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGtttt < 2:979938/139‑1 (MQ=255) cGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCg < 2:1024382/139‑1 (MQ=255) cGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAAt < 1:209052/139‑1 (MQ=255) cAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGt < 2:756104/99‑1 (MQ=255) cAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGt > 1:756104/1‑99 (MQ=255) aTCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCa < 2:320088/99‑1 (MQ=255) aTCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCa > 1:320088/1‑99 (MQ=255) aTCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCt < 2:920244/111‑1 (MQ=255) aTCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCt > 1:920244/1‑111 (MQ=255) aTCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGa < 2:297480/139‑1 (MQ=255) aaCATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGAGACACAATTTCAATCAAGGAGTCATTa < 1:1248389/139‑1 (MQ=255) aTTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAg > 1:1016699/1‑127 (MQ=255) aTTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAg < 2:1016699/127‑1 (MQ=255) ccACGCAAGGTCAGCAAACTGACAGTATCTCTCCGACCTGGCAGGCATCAGAAAATCGCTCATACTTTAAGCGGTAAGCAGCGCCTTTTGAGGCTGTTTTCGATACACAATCGCATTCAAAGAGTCACTATGGCtaggt < 2:282684/139‑5 (MQ=255) cGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCt > 1:1121666/1‑57 (MQ=255) cGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCt < 2:1121666/57‑1 (MQ=255) cGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCtggttggt > 1:51937/1‑139 (MQ=255) cGCATGGTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCtggttggt > 2:622517/1‑139 (MQ=255) ggTCAGCAAACTGACATTATCTCTCCGCCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTggttggtt < 2:123334/135‑1 (MQ=255) ggTCAGCAAACTGACATTATCTCTCCGCCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTggttggtt > 1:123334/1‑135 (MQ=255) gTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTGGTTTGAAc < 2:802013/139‑1 (MQ=255) gTCAGCAAACTGACATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTGGTTTGAAc < 1:1084490/139‑1 (MQ=255) gTCAGCAAACTGACATTATCTCTCCGCCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTGGTTTGaa < 2:1061015/138‑1 (MQ=255) aCATTATCTCTCCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTGGTTTGAACTCAGTAagag < 2:1204829/137‑1 (MQ=255) tcCGTCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTGGTTTGAACTCAGTAAGAGCAGTGATAAt < 2:1196888/137‑1 (MQ=255) | GGAAGCCGACGCCTGCCGCATCGTTTAGTTTTAGCGACATTATTTTGTTAGCCGGAGATGGCGTTCAGACCAGATCCGGCAACATTATCCCACGCATGGTCAGCAAACTGACATTATCTCTCCGCCCTGGCAGGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTGGTTTGAACTCAGTAAGAGCAGTGATAAT > NZ_CP009273/2158452‑2158708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |