| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,569,373 | A→G | intergenic (‑209/+84) | eutS ← / ← maeB | ethanolamine utilization microcompartment protein EutS/NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,569,373 | 0 | A | G | 80.7% | 58.9 / 13.7 | 31 | intergenic (‑209/+84) | eutS/maeB | ethanolamine utilization microcompartment protein EutS/NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (4/2); new base G (16/9); total (20/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
AAAGGTGAGGTAGATCACTAAGAATGGAGAGATATTCGCTGTGGTGCATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGC > NZ_CP009273/2569246‑2569489 | aaaGGTGAGGTAGATCACTAAGAATGGAGAGATATTCGCTGTGGTGCATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGtaa < 2:1192823/138‑1 (MQ=255) agagaTATTCGCTGTGGTGCATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTaaa > 1:402937/1‑139 (MQ=255) gagaTATTCGCTGTGGTGCATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAAc > 2:696993/1‑139 (MQ=255) gCTGTGGTGCATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTAccc > 1:258068/1‑139 (MQ=255) tggtgCATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGaa > 2:167422/1‑139 (MQ=255) cATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAat < 1:193512/106‑1 (MQ=255) cATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAat > 2:193512/1‑106 (MQ=255) cATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATAtt < 2:1150208/138‑1 (MQ=255) aaCGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAatatat > 2:695829/1‑93 (MQ=255) aaCGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAatatat < 1:695829/93‑1 (MQ=255) cGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGtt > 1:895316/1‑138 (MQ=255) gagaTATTATATAGACTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTg < 1:80517/138‑1 (MQ=255) aGACTGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATAtt > 2:8708/1‑81 (MQ=255) aGACTGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATAtt < 1:8708/81‑1 (MQ=255) aCTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGa > 1:1258676/1‑74 (MQ=255) aCTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGa < 2:1258676/74‑1 (MQ=255) aCTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 2:1194478/1‑139 (MQ=255) aCTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 2:324637/1‑139 (MQ=255) cTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 1:210380/1‑138 (MQ=255) cTGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc < 2:210380/138‑1 (MQ=255) tGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGc < 1:60592/63‑1 (MQ=255) tGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGc > 2:60592/1‑63 (MQ=255) tGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 1:1069300/1‑137 (MQ=255) tGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 2:745841/1‑137 (MQ=255) tGCTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 1:697955/1‑137 (MQ=255) tGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCtt < 2:330898/38‑1 (MQ=255) tGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCtt > 1:330898/1‑38 (MQ=255) tGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 1:317630/1‑137 (MQ=255) tGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGc > 1:162382/1‑137 (MQ=255) cTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTg < 2:729910/120‑1 (MQ=255) cTTTTTTTTATTATTCGCGAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTg > 1:729910/1‑120 (MQ=255) | AAAGGTGAGGTAGATCACTAAGAATGGAGAGATATTCGCTGTGGTGCATAAACTTTCATATGCAACGCATGAATATAAATAAAATAATATCGAGATATTATATAGACTGCTTTTTTTTATTATTCGCAAACTCAGTAATAAGCTTTACTAATATATTGCAGCTAAACTGCTTACCCTGAATATTCAGGGTAAGCGTGAGAGTTAAAAAAAATTACAGCGGTTGGGTTTGCGCTTCTACCACGGC > NZ_CP009273/2569246‑2569489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |