BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	3,086,782	G→A	A163T (GCC→ACC)	yqgE →	YqgE/AlgH family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	3,086,782	0	G	A	99.0%	384.7 / ‑4.6	98	A163T (GCC→ACC)	yqgE	YqgE/AlgH family protein
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (46/51); total (47/51)
Fisher's exact test for biased strand distribution p-value = 4.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01

CCGTCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTGCCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCATTGGCGTAGCGGTC  >  NZ_CP009273/3086656‑3086915

ccGTCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGgc                                                                                                                           >  2:891963/1‑139 (MQ=255)

ccGTCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGgc                                                                                                                           >  1:206905/1‑139 (MQ=255)

  gTCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGgcgc                                                                                                                         >  2:1081817/1‑139 (MQ=255)

  gTCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGgcgc                                                                                                                         >  2:851357/1‑139 (MQ=255)

  gTCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGgcgc                                                                                                                         >  1:1043044/1‑139 (MQ=255)

   tCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGgcgc                                                                                                                         >  1:125763/1‑138 (MQ=255)

   tCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGgcgc                                                                                                                         >  1:21199/1‑138 (MQ=255)

         gTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAggcgg                                                                                                                  <  2:153952/139‑1 (MQ=255)

         gTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAggcgg                                                                                                                  <  1:891963/139‑1 (MQ=255)

           aTTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAggcggc                                                                                                                 >  1:706033/1‑138 (MQ=255)

            ttGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCa                                                                                                                <  2:463279/138‑1 (MQ=255)

              ggtggCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCaaaa                                                                                                             >  1:530299/1‑139 (MQ=255)

                 ggCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTGCCGACCGCTGGCGCGAGGCGGCAAAACt                                                                                                           >  2:611460/1‑138 (MQ=255)

                  gCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGa                                                                                                         <  1:566303/139‑1 (MQ=255)

                  gCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGa                                                                                                         <  2:420012/139‑1 (MQ=255)

                  gCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGa                                                                                                         <  1:282271/139‑1 (MQ=255)

                  gCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGa                                                                                                         <  2:473458/139‑1 (MQ=255)

                   ctctGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTgtt                                                                                                        <  1:531439/139‑3 (MQ=255)

                   ctctGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        <  2:1043044/139‑1 (MQ=255)

                   ctctGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACCGAt                                                                                                        <  1:1172399/139‑1 (MQ=255)

                        ggTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGgtg                                                                                                   <  1:942021/139‑1 (MQ=255)

                        ggTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGgt                                                                                                    <  2:508853/138‑1 (MQ=255)

                            aTGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTgg                                                                                                <  2:1050284/138‑1 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        >  1:869821/1‑129 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        >  1:455220/1‑129 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        <  2:455220/129‑1 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        <  2:869821/129‑1 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGa                                                                                               >  2:167800/1‑138 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGa                                                                                               >  1:442033/1‑138 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGa                                                                                               >  1:191152/1‑138 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGa                                                                                               >  1:656375/1‑138 (MQ=255)

                             tGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGa                                                                                               >  2:686863/1‑138 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        <  2:1228520/124‑1 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        >  1:1228520/1‑124 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  2:298892/1‑139 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  2:33919/1‑139 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  2:763906/1‑139 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  2:888096/1‑139 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  1:1022887/1‑139 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  1:42692/1‑139 (MQ=255)

                                  cctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  1:445395/1‑139 (MQ=255)

                                   ctGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATtct                                                                                         >  2:475744/1‑138 (MQ=255)

                                    tGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCa                                                                                       >  2:263464/1‑139 (MQ=255)

                                      ggAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAcc                                                                                     <  2:21199/139‑1 (MQ=255)

                                      ggAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAc                                                                                      <  2:216232/138‑1 (MQ=255)

                                      ggAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAc                                                                                      <  1:792188/138‑1 (MQ=255)

                                      ggAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAc                                                                                      <  1:874775/138‑1 (MQ=255)

                                           aaGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAGCTGATTGGTGTGGATATTCTCACCATGcc                                                                                <  2:206905/139‑1 (MQ=255)

                                           aaGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGcc                                                                                <  1:167800/139‑1 (MQ=255)

                                            aGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAc                                                                                      >  2:3648/1‑132 (MQ=255)

                                            aGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAc                                                                                      <  1:3648/132‑1 (MQ=255)

                                            aGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCt                                                                               >  1:941698/1‑139 (MQ=255)

                                               tCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGgt                                                                            <  2:530299/139‑1 (MQ=255)

                                               tCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCAAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGgt                                                                            <  1:636492/139‑1 (MQ=255)

                                                        aCAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   <  2:485236/139‑1 (MQ=255)

                                                        aCAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   <  2:125763/139‑1 (MQ=255)

                                                        aCAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   <  2:445395/139‑1 (MQ=255)

                                                        aCAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   >  1:1261811/1‑139 (MQ=255)

                                                        aCAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   <  2:941698/139‑1 (MQ=255)

                                                                ttCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCtg                                                           <  1:686863/139‑1 (MQ=255)

                                                                     gATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCtgat                                                         <  1:957622/136‑1 (MQ=255)

                                                                       tAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTg                                                    <  2:535311/139‑1 (MQ=255)

                                                                          cgcgTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGaa                                                 >  2:239023/1‑139 (MQ=255)

                                                                          cgcgTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGaa                                                 <  1:279202/139‑1 (MQ=255)

                                                                          cgcgTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGaa                                                 >  2:1136504/1‑139 (MQ=255)

                                                                          cgcgTGGCTAACGGCCCCGGCAGATCTGAAGATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGGGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCGTGATGAGTGGaa                                                 <  2:767049/139‑1 (MQ=255)

                                                                                 cTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACt                                          <  1:1081817/139‑1 (MQ=255)

                                                                                    aCGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGc                                       >  2:604068/1‑139 (MQ=255)

                                                                                     cGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   <  1:1003043/110‑1 (MQ=255)

                                                                                     cGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   >  2:1003043/1‑110 (MQ=255)

                                                                                          ccGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATAtt                                                                                           <  1:758347/81‑1 (MQ=255)

                                                                                          ccGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATAtt                                                                                           >  2:758347/1‑81 (MQ=255)

                                                                                           cGGCAGATCTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGAc                                >  1:74352/1‑139 (MQ=255)

                                                                                                gATCTGAATATTCTGTGCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCgg                           <  2:634921/139‑1 (MQ=255)

                                                                                                   cTGAATATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCAc                        >  1:569083/1‑139 (MQ=255)

                                                                                                      aaTATTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAG‑GGAACCTTACTCGCCTTCGACTTCGGCACCaaa                    <  2:42692/139‑1 (MQ=255)

                                                                                                        tatTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGgtg                                                                                                   <  2:371541/59‑1 (MQ=255)

                                                                                                        tatTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGgtg                                                                                                   >  1:371541/1‑59 (MQ=255)

                                                                                                        tatTCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaa                     >  2:573744/1‑137 (MQ=255)

                                                                                                           tCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        >  1:109131/1‑51 (MQ=255)

                                                                                                           tCTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        <  2:109131/51‑1 (MQ=255)

                                                                                                            cTGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCa                <  2:156325/138‑1 (MQ=255)

                                                                                                             tGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAc                                                                                      >  2:372121/1‑67 (MQ=255)

                                                                                                             tGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCAc                                                                                      <  1:372121/67‑1 (MQ=255)

                                                                                                             tGTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCAtt              >  1:577750/1‑139 (MQ=255)

                                                                                                              gTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTgg                                                   >  2:854/1‑101 (MQ=255)

                                                                                                              gTTCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTgg                                                   <  1:854/101‑1 (MQ=255)

                                                                                                               ttCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCAt               <  1:239023/136‑1 (MQ=255)

                                                                                                               ttCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCAt               <  1:871331/136‑1 (MQ=255)

                                                                                                                tCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   <  1:207029/83‑1 (MQ=255)

                                                                                                                tCAAAACGCCGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGa                                                                   >  2:207029/1‑83 (MQ=255)

                                                                                                                        ccGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCATTGGCGTAGCGGt   <  1:851357/139‑1 (MQ=255)

                                                                                                                        ccGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCATTGGCGTAGCGGt   <  2:74352/139‑1 (MQ=255)

                                                                                                                         cGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        <  1:1240352/37‑1 (MQ=255)

                                                                                                                         cGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGAt                                                                                                        >  2:1240352/1‑37 (MQ=255)

                                                                                                                         cGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACt                                          <  1:946257/99‑1 (MQ=255)

                                                                                                                         cGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACt                                          >  2:946257/1‑99 (MQ=255)

                                                                                                                         cGATTACCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCATTGGCGTAGCGGTc  >  1:165860/1‑139 (MQ=255)

CCGTCTGACGTATTGGTGGCTCTGGGTTATGCCTCCTGGGAGAAAGGTCAACTGGAACAAGAAATTCTCGATAACGCGTGGCTAACGGCCCCGGCAGATCTGAATATTCTGTTCAAAACGCCGATTGCCGACCGCTGGCGCGAGGCGGCAAAACTGATTGGTGTGGATATTCTCACCATGCCTGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAAGCATTGGCGTAGCGGTC  >  NZ_CP009273/3086656‑3086915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`