| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,286,821 | C→T | A21A (GCC→GCT) | lpoA → | penicillin‑binding protein activator LpoA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,286,821 | 0 | C | T | 97.8% | 324.9 / ‑1.6 | 89 | A21A (GCC→GCT) | lpoA | penicillin‑binding protein activator LpoA |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (39/48); total (40/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 | |||||||||||
TTTCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCCCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCTGATGATACCAGGATCAAC > NZ_CP009273/3286689‑3286950 | tttCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGAtt > 2:925648/1‑139 (MQ=255)tttCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGAtt > 1:564269/1‑139 (MQ=255)tttCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGAtt > 1:554952/1‑139 (MQ=255) ttCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGAttt > 2:149601/1‑139 (MQ=255) ttGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGc > 1:65265/1‑139 (MQ=255) tgtCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCgg > 1:884436/1‑139 (MQ=255) tcgtcCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGtt > 1:347951/1‑139 (MQ=255) cGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTgg < 2:564269/138‑1 (MQ=255) cGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTgg < 2:554952/138‑1 (MQ=255) cGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTgg < 1:200094/138‑1 (MQ=255) cGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGc < 1:175094/139‑1 (MQ=255) cGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGc < 2:683291/139‑1 (MQ=255) aTTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCAcc > 2:390933/1‑139 (MQ=255) aTTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCAcc > 2:165132/1‑139 (MQ=255) ttGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCAccc < 1:994327/139‑1 (MQ=255) gCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCTTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa < 2:799811/138‑1 (MQ=255) gCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa < 1:1163162/138‑1 (MQ=255) gCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa < 2:772863/138‑1 (MQ=255) gCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa < 2:94377/138‑1 (MQ=255) gCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa < 1:642629/138‑1 (MQ=255) ccGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATa > 1:932558/1‑139 (MQ=255) aTTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTc < 1:27945/139‑1 (MQ=255) atatTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGAt < 1:338562/139‑1 (MQ=255) atatTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGAt < 1:257609/139‑1 (MQ=255) aGCATTGCGTAAAAAAAATATCTCTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTc > 2:271128/1‑138 (MQ=255) aGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa < 1:734310/123‑1 (MQ=255) aGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa > 2:734310/1‑123 (MQ=255) aGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTcc > 2:1212523/1‑139 (MQ=255) aGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTc > 2:230622/1‑138 (MQ=255) aGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTc > 2:250994/1‑138 (MQ=255) aGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTc > 2:656493/1‑138 (MQ=255) gCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCa < 2:347951/139‑1 (MQ=255) gCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCa < 2:694655/139‑1 (MQ=255) cATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc < 1:811259/139‑1 (MQ=255) cATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc < 1:1212523/139‑1 (MQ=255) cATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc < 1:925648/139‑1 (MQ=255) tGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGc > 1:1042946/1‑139 (MQ=255) cGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCt > 1:1274812/1‑138 (MQ=255) aaaaaaTATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc > 1:477012/1‑129 (MQ=255) aaaaaaTATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc < 2:477012/129‑1 (MQ=255) aaaaGATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCa < 2:968250/139‑1 (MQ=255) tCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCa < 2:1077420/138‑1 (MQ=255) tCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCa < 2:164002/138‑1 (MQ=255) tCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCa < 1:462849/138‑1 (MQ=255) tCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCa < 2:932558/138‑1 (MQ=255) gATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGgcg < 2:884436/137‑1 (MQ=255) tGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTc < 1:1063209/139‑1 (MQ=255) ggTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGAt > 1:1157067/1‑97 (MQ=255) ggTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGAt < 2:1157067/97‑1 (MQ=255) ggTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTc > 2:1095329/1‑102 (MQ=255) ggTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTc < 1:1095329/102‑1 (MQ=255) tACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCAccc > 2:822923/1‑84 (MQ=255) tACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCAccc < 1:822923/84‑1 (MQ=255) cccTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCCCTGATTTTCGc < 2:737411/68‑1 (MQ=255) cccTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCCCTGATTTTCGc > 1:737411/1‑68 (MQ=255) ccTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa < 2:130705/82‑1 (MQ=255) ccTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCa > 1:130705/1‑82 (MQ=255) ccTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc < 1:930417/100‑1 (MQ=255) ccTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc > 2:930417/1‑100 (MQ=255) ccTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCtt > 1:969516/1‑139 (MQ=255) tCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCttt > 2:19432/1‑138 (MQ=255) tCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCttt > 1:944170/1‑138 (MQ=255) tCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCttt > 2:54383/1‑138 (MQ=255) tCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCttt > 1:437718/1‑138 (MQ=255) aaCATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc > 1:147126/1‑96 (MQ=255) aaCATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCAc < 2:147126/96‑1 (MQ=255) aaCATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTAt > 2:1164912/1‑139 (MQ=255) tttGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATg > 1:676940/1‑139 (MQ=255) tGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCtt < 2:584764/121‑1 (MQ=255) tGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCtt > 1:584764/1‑121 (MQ=255) aaaGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATgcagc < 2:969516/139‑1 (MQ=255) aaGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATgcagca < 2:676940/139‑1 (MQ=255) gcgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGct < 1:585468/139‑1 (MQ=255) gcgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGct < 2:944170/139‑1 (MQ=255) cgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGc < 2:475904/50‑1 (MQ=255) cgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGc > 1:475904/1‑50 (MQ=255) cgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTc > 2:997172/1‑60 (MQ=255) cgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTc < 1:997172/60‑1 (MQ=255) cgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGctc > 2:416916/1‑139 (MQ=255) cgcgTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGctc > 1:1038815/1‑139 (MQ=255) gTTGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCtga < 2:41133/139‑1 (MQ=255) ttGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCtgat < 2:1038815/139‑1 (MQ=255) ttGTCTGCCTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCtgat < 1:416916/139‑1 (MQ=255) ccTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCTGATGATa < 1:250994/136‑1 (MQ=255) ccTGTTGTTCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCTGATGATAcc < 1:940495/138‑1 (MQ=255) ttCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCTGATGATACCAGGATCaa < 1:54383/139‑1 (MQ=255) tCTGGCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCTGATGATACCAGGATCAAc > 2:549473/1‑139 (MQ=255) ggCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGct < 2:47051/116‑1 (MQ=255) ggCAGCTCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGct > 1:47051/1‑116 (MQ=255) | TTTCATTGTGTCGTCCGTATTGCCGATTTAATATTGAGCATTGCGTAAAAAAAATATCACTGGATACATTATGGTACCCTCAACATTTTCTCGTTTGAAAGCCGCGCGTTGTCTGCCTGTTGTTCTGGCAGCCCTGATTTTCGCCGGTTGTGGCACCCATACTCCCGATCAGTCCACTGCTTATATGCAGGGCACGGCGCAGGCTGATTCTGCCTTTTATCTTCAGCAGATGCAGCAAAGCTCTGATGATACCAGGATCAAC > NZ_CP009273/3286689‑3286950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |