Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 3,312,159 | C→T | A55V (GCG→GTG) | argG → | argininosuccinate synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 3,312,159 | 0 | C | T | 93.2% | 241.3 / 5.9 | 73 | A55V (GCG→GTG) | argG | argininosuccinate synthase |
Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (38/30); total (41/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-01 |
GTCAACGTATTGGTATCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCC > NZ_CP009273/3312027‑3312284 | gTCAACGTATTGGTATCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATccc > 1:1246217/1‑139 (MQ=255) gTCAACGTATTGGTATCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATccc > 1:875054/1‑139 (MQ=255) aaCGTATTGGTATCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCtcg < 2:875054/139‑1 (MQ=255) tttgTATCGCTTTCTCTGGCGGTCTGGACACCAGTGCCGCTCTGCTGTGGATGCGACAAAAGGGGGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg < 2:1133343/135‑1 (MQ=255) ttGGTATCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg < 1:957392/138‑1 (MQ=255) ttGGTATCGCTTTTTCTGGCGGTCTGGACACC‑GTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGCGATCCCTCGTCGTGcc < 2:771701/139‑1 (MQ=255) tGGTATCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCACGTCGTGc > 2:816153/1‑138 (MQ=255) tCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATgg > 2:58165/1‑138 (MQ=255) tCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATgg > 1:330942/1‑138 (MQ=255) gCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg < 2:393171/130‑1 (MQ=255) gCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg > 1:393171/1‑130 (MQ=255) cTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATa < 1:308592/139‑1 (MQ=255) ttCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGgc > 2:1272288/1‑139 (MQ=255) gCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGga < 2:1246217/139‑1 (MQ=255) gACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg < 1:1272288/136‑1 (MQ=255) gACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg < 1:518308/136‑1 (MQ=255) gACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCAc < 2:906673/139‑1 (MQ=255) cAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCt > 1:454822/1‑138 (MQ=255) tGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATc > 2:272156/1‑139 (MQ=255) tGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATc > 1:739056/1‑139 (MQ=255) gCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg < 2:988642/124‑1 (MQ=255) gCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg > 1:988642/1‑124 (MQ=255) cACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTg > 2:385935/1‑139 (MQ=255) ctgTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCa < 1:760974/139‑1 (MQ=255) cGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACtgg < 2:454822/139‑1 (MQ=255) gACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCtcg > 2:333877/1‑79 (MQ=255) gACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCtcg < 1:333877/79‑1 (MQ=255) gACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACtggt > 2:528538/1‑139 (MQ=255) gACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACtggt > 1:280108/1‑139 (MQ=255) gACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACtggt < 1:452490/139‑1 (MQ=255) gACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACtggt > 2:240628/1‑139 (MQ=255) aGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAgg > 2:249718/1‑138 (MQ=255) cGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTAt > 2:16024/1‑139 (MQ=255) ttCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGc > 1:493415/1‑139 (MQ=255) cTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCg < 1:816153/138‑1 (MQ=255) atatACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGACGGTATTGCCGCTATTCAg > 2:796668/1‑139 (MQ=255) atatACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAg > 2:73607/1‑139 (MQ=255) ataCTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGACGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAgtg > 1:278507/1‑139 (MQ=255) tGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgc > 2:296144/1‑139 (MQ=255) gCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg > 1:421777/1‑76 (MQ=255) gCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg < 2:421777/76‑1 (MQ=255) gCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg > 1:824302/1‑76 (MQ=255) gCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACg < 2:824302/76‑1 (MQ=255) gCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg > 2:980832/1‑139 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCtcgtc < 1:603535/48‑1 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCtcgtc > 2:603535/1‑48 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg < 2:169164/51‑1 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg > 1:169164/1‑51 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg > 1:791582/1‑138 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg < 1:150947/138‑1 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg > 2:1030528/1‑138 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg > 2:1101001/1‑138 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg < 2:280108/138‑1 (MQ=255) cAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg > 2:925992/1‑138 (MQ=255) aaaCCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg < 2:372156/50‑1 (MQ=255) aaaCCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTg > 1:372156/1‑50 (MQ=255) aaaCCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCa < 1:296144/139‑1 (MQ=255) aaaCCTGGGCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCa < 1:805125/139‑1 (MQ=255) cTGGGCCAGCCAGACGAAGAGGATTATGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCAttt > 1:990200/1‑138 (MQ=255) ggCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCg > 1:648349/1‑115 (MQ=255) ggCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCg < 2:648349/115‑1 (MQ=255) ggCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg < 1:1009435/130‑1 (MQ=255) ggCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGgcg > 2:1009435/1‑130 (MQ=255) ggCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCa > 2:315556/1‑132 (MQ=255) ggCCAGCCAGACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCa < 1:315556/132‑1 (MQ=255) agccagACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAacac < 1:460349/139‑1 (MQ=255) gccagACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCg > 2:557342/1‑110 (MQ=255) gccagACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCg < 1:557342/110‑1 (MQ=255) gccagACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAacac > 1:1289153/1‑138 (MQ=255) gccagACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAacac > 1:484494/1‑138 (MQ=255) gACGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACcg < 2:484494/139‑1 (MQ=255) aCGAAGAGGATTATGATGTGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACcgg > 2:867723/1‑139 (MQ=255) gagGATTATGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGcc < 1:240628/139‑1 (MQ=255) | GTCAACGTATTGGTATCGCTTTTTCTGGCGGTCTGGACACCAGTGCCGCACTGCTGTGGATGCGACAAAAGGGAGCGGTTCCTTATGCATATACTGCAAACCTGGGCCAGCCAGACGAAGAGGATTATGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCC > NZ_CP009273/3312027‑3312284 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |