Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	3,467,417	A→G	pseudogene (24/468 nt)	rpsG ←	30S ribosomal protein S7

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	3,467,417	0	A	G	87.3%	210.3 / 22.8	79	pseudogene (24/468 nt)	rpsG	30S ribosomal protein S7
Reads supporting (aligned to +/- strand):  ref base A (6/4);  new base G (40/29);  total (46/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01

GCGCTGAGCCAGGGTCTCCAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCATTAAGCCTTAGGAC  >  NZ_CP009273/3467282‑3467550                                                                                                                                        |                                                                                                                                      gcgcTGAGCCAGGGTCTCCAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGcc                                                                                                                                     >  1:427592/1‑138 (MQ=255)    cTGAGCCAGGGTCTCCAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCaa                                                                                                                                   >  1:1264757/1‑137 (MQ=255)    cTGAGCCAGGGTCTCCAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCaa                                                                                                                                   <  2:1264757/137‑1 (MQ=255)            gggTCTCCAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGcgac                                                                                                                          >  2:791908/1‑138 (MQ=255)               tctcCAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGacgacg                                                                                                                      <  1:869986/139‑1 (MQ=255)                   cAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTgg                                                                                                                   >  2:770082/1‑138 (MQ=255)                       gcgcTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATgg                                                                                                              <  2:510060/139‑1 (MQ=255)                        cgcTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATgg                                                                                                              >  2:839731/1‑138 (MQ=255)                         gcTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGa                                                                                                             >  1:183351/1‑138 (MQ=255)                                     aGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTGGCATGGAACTACTCCgttgt                                                                                                >  2:880304/1‑139 (MQ=255)                                      gATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgt                                                                                                <  1:394501/138‑1 (MQ=255)                                      gATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgt                                                                                                <  2:738480/138‑1 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGCACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  2:886405/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCa                                                                                                                 <  2:981908/120‑1 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCa                                                                                                                 >  1:981908/1‑120 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTcc                                                                                                     <  1:323805/132‑1 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTcc                                                                                                     <  2:79273/132‑1 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTcc                                                                                                     >  1:79273/1‑132 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  2:18576/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  2:333075/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  2:1255184/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  2:597739/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  2:731879/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  2:1024997/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:63172/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:1010151/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:1063218/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:1206800/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:471914/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:270689/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:328092/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgtt                                                                                               >  1:384638/1‑138 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgt                                                                                                <  2:879302/137‑1 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgt                                                                                                >  1:879302/1‑137 (MQ=255)                                       aTTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATAATcc                                                                                                     >  2:323805/1‑132 (MQ=255)                                         tCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAAt                                                                                            >  2:843344/1‑139 (MQ=255)                                           agcagTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAAtt                                                                                           >  1:1274829/1‑138 (MQ=255)                                           agcagTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAAtt                                                                                           <  1:333075/138‑1 (MQ=255)                                            gcagTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAAtt                                                                                           >  2:239469/1‑137 (MQ=255)                                             cagTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAg                                                                                        >  1:511687/1‑139 (MQ=255)                                              agTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAg                                                                                        >  2:661609/1‑138 (MQ=255)                                               gTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGa                                                                                      <  1:843344/139‑1 (MQ=255)                                                tAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGAt                                                                                     >  2:545270/1‑139 (MQ=255)                                                  gATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTg                                                                                   >  1:1167238/1‑139 (MQ=255)                                                  gATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTg                                                                                   >  1:168819/1‑139 (MQ=255)                                                               ctaccatcAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTAc                                                                      >  1:578234/1‑139 (MQ=255)                                                                  ccatcAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTa                                                                       <  1:565304/135‑1 (MQ=255)                                                                  ccatcAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTa                                                                       <  2:558525/135‑1 (MQ=255)                                                                   catcAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGagt                                                                  <  1:617750/139‑1 (MQ=255)                                                                      cAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGagtt                                                                 >  2:56573/1‑137 (MQ=255)                                                                                 cAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACAttt                                                    <  1:1024997/139‑1 (MQ=255)                                                                                   aaTTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTgg                                                                                                                   <  1:520514/74‑1 (MQ=255)                                                                                   aaTTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTgg                                                                                                                   >  2:520514/1‑74 (MQ=255)                                                                                         gCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTaa                                             >  1:1075847/1‑138 (MQ=255)                                                                                              cagTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGtt                                       >  1:684030/1‑139 (MQ=255)                                                                                                      aTCCGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCctta                               >  1:48440/1‑139 (MQ=255)                                                                                                         cGAACTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCcttact                             >  1:47867/1‑138 (MQ=255)                                                                                                           aaCTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTaa                          >  2:430169/1‑139 (MQ=255)                                                                                                           aaCTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTaa                          <  2:372757/139‑1 (MQ=255)                                                                                                           aaCTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTaa                          <  2:48440/139‑1 (MQ=255)                                                                                                           aaCTTCGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTaa                          >  2:288670/1‑139 (MQ=255)                                                                                                                cGGATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACg                        >  2:208636/1‑136 (MQ=255)                                                                                                                cGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTgg                                                                                                                   >  2:865926/1‑45 (MQ=255)                                                                                                                cGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTgg                                                                                                                   <  1:865926/45‑1 (MQ=255)                                                                                                                 ggATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGgaga                    <  1:1000235/139‑1 (MQ=255)                                                                                                                 ggATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGgaga                    <  1:138523/139‑1 (MQ=255)                                                                                                                 ggATCCGGCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGgaga                    <  2:1075847/139‑1 (MQ=255)                                                                                                                       ggCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgt                                                                                                <  2:805083/57‑1 (MQ=255)                                                                                                                       ggCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCgttgt                                                                                                >  1:805083/1‑57 (MQ=255)                                                                                                                       ggCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCAtt              <  2:519338/139‑1 (MQ=255)                                                                                                                       ggCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCAtt              <  1:139321/139‑1 (MQ=255)                                                                                                                       ggCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCAtt              <  2:471914/139‑1 (MQ=255)                                                                                                                       ggCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCAtt              <  2:168819/139‑1 (MQ=255)                                                                                                                       ggCAGAATTTTACGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCAtt              <  2:1066158/139‑1 (MQ=255)                                                                                                                                   cGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTCCGATTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCATTAAGCCTTAGGAc  <  1:134588/139‑1 (MQ=255)                                                                                                                                   cGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCATTAAGCCTTAGGa   <  2:427592/138‑1 (MQ=255)                                                                                                                                   cGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCATTAAGCCTTAGGa   <  1:190621/138‑1 (MQ=255)                                                                                                                                   cGCTGGCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCATTAAGCCTTAGGa   <  2:183351/138‑1 (MQ=255)                                                                                                                                   cGCTGACCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCATTAAGCCTTAGGa   <  2:684030/138‑1 (MQ=255)                                                                                                                                        aCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCaa                                                                              >  1:127332/1‑58 (MQ=255)                                                                                                                                        aCCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCaa                                                                              <  2:127332/58‑1 (MQ=255)                                                                                                                                        |                                                                                                                                      GCGCTGAGCCAGGGTCTCCAGCGCGCTGTATACGATAGATTCAGCAGTAGATTTTTTACCATCTACCATCAGGATATTTACAAATTTAGCCAGCAGTTCTGATCCGAACTTCGGATCCGGCAGAATTTTACGCTGACCAATGACGCGACGACGTGGCATGGAAATACTCCGTTGTTAATTCAGGATTGTCCAAAACTCTACGAGTTTAGTTTGACATTTAAGTTAAAACGTTTGGCCTTACTTAACGGAGAACCATTAAGCCTTAGGAC  >  NZ_CP009273/3467282‑3467550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑