| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,521,284 | A→G | D486G (GAT→GGT) | igaA → | intracellular growth attenuator protein IgaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,521,284 | 0 | A | G | 97.3% | 261.9 / ‑1.6 | 73 | D486G (GAT→GGT) | igaA | intracellular growth attenuator protein IgaA |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (32/39); total (33/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.17e-01 | |||||||||||
AACTGGTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGG > NZ_CP009273/3521152‑3521417 | aaCTGGTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGttt < 1:765442/136‑1 (MQ=255)aaCTGGTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTgg > 2:576377/1‑139 (MQ=255) ggTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGa > 1:655630/1‑138 (MQ=255) gTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACa < 2:281948/139‑1 (MQ=255) gTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACa < 1:126056/139‑1 (MQ=255) gTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACa < 2:348054/139‑1 (MQ=255) caacaaAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACAtt > 2:768698/1‑139 (MQ=255) aGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACt > 1:1138282/1‑138 (MQ=255) cGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTg > 1:1254541/1‑137 (MQ=255) cGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTg > 2:546960/1‑137 (MQ=255) cGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCCTGATGGTTTTGGCGACATTGTACTg > 2:875672/1‑137 (MQ=255) ggCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACa < 1:247552/139‑1 (MQ=255) gCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAg < 1:80943/139‑1 (MQ=255) gCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCCTGATGGTTTTGGCGACATTGTACTGAAGACAg < 1:875672/139‑1 (MQ=255) tGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGa > 1:1257174/1‑139 (MQ=255) aGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCg < 2:243862/110‑1 (MQ=255) aGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCg > 1:243862/1‑110 (MQ=255) aGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGt > 1:401806/1‑139 (MQ=255) aGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGt > 2:871161/1‑139 (MQ=255) cAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTc < 1:871161/139‑1 (MQ=255) gTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTg < 1:392695/139‑1 (MQ=255) gTTAATCGCCAGATGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTg < 2:361738/139‑1 (MQ=255) ttAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGc > 1:518953/1‑139 (MQ=255) aaTCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGcc < 1:768698/138‑1 (MQ=255) tCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCa > 2:976964/1‑137 (MQ=255) gCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGa < 2:1254541/139‑1 (MQ=255) aGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGa < 2:1257174/139‑1 (MQ=255) gCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACt > 2:51024/1‑105 (MQ=255) gCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACt < 1:51024/105‑1 (MQ=255) gCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGCTGAc > 2:342671/1‑139 (MQ=255) gCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGAc > 2:342688/1‑139 (MQ=255) cccTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACtgtgtg < 1:976964/139‑1 (MQ=255) cccTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACtgtgtg < 2:132366/139‑1 (MQ=255) tAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACa < 2:286805/89‑1 (MQ=255) tAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACa > 1:286805/1‑89 (MQ=255) aaCCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGa < 2:270308/137‑1 (MQ=255) gAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGaaa > 2:1064281/1‑138 (MQ=255) aaGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTgg < 2:969657/76‑1 (MQ=255) aaGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTgg > 1:969657/1‑76 (MQ=255) aaGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGaaaaa > 1:716947/1‑139 (MQ=255) aaGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGaaaaa > 2:575739/1‑139 (MQ=255) tGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATgcg < 1:880486/139‑1 (MQ=255) aTCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTg > 2:171627/1‑139 (MQ=255) tcGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGt > 1:516227/1‑138 (MQ=255) gcgTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGt < 2:1032605/136‑1 (MQ=255) gcgTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGt < 1:577886/136‑1 (MQ=255) gcgTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGt < 1:468620/136‑1 (MQ=255) gcgTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCa < 1:1094664/138‑1 (MQ=255) cgTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACa < 1:1063785/82‑1 (MQ=255) cgTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACa > 2:1063785/1‑82 (MQ=255) gTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTgg > 1:411567/1‑58 (MQ=255) gTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTgg < 2:411567/58‑1 (MQ=255) gTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCgg < 2:401806/139‑1 (MQ=255) tGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGc < 2:518953/139‑1 (MQ=255) ccTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCa < 2:435387/138‑1 (MQ=255) cTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCaa > 1:739082/1‑138 (MQ=255) aTTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGt < 2:507213/139‑1 (MQ=255) cGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCg < 2:887084/69‑1 (MQ=255) cGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCg > 1:887084/1‑69 (MQ=255) cAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGc < 2:1290542/125‑1 (MQ=255) cAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGc > 1:1290542/1‑125 (MQ=255) aTTCAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGAcg < 1:576377/139‑1 (MQ=255) cAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGt < 1:173824/123‑1 (MQ=255) cAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGt > 2:173824/1‑123 (MQ=255) cAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGa < 1:793934/134‑1 (MQ=255) cAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGa > 2:793934/1‑134 (MQ=255) cAAAAATCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGAcgcg < 1:752440/138‑1 (MQ=255) aaaTCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGAcgcg < 2:469983/135‑1 (MQ=255) aaaTCCGGCATGGTATTGCTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGAcgcg > 1:469983/1‑135 (MQ=255) cTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGAt > 1:954871/1‑57 (MQ=255) cTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGAt < 2:954871/57‑1 (MQ=255) cTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTaaaa > 2:998633/1‑126 (MQ=255) cTTGATGGTTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTaaaa < 1:998633/126‑1 (MQ=255) gatggtTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCggg > 1:76203/1‑138 (MQ=255) gatggtTTTGGCGACATTGTACTGAAGACAGCAGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCggg < 2:1138282/138‑1 (MQ=255) atggtTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGa < 2:401245/109‑1 (MQ=255) atggtTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGa > 1:401245/1‑109 (MQ=255) atggtTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCggg > 1:1052817/1‑137 (MQ=255) | AACTGGTCAACAAAGCGACGGCATTGACTGAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGG > NZ_CP009273/3521152‑3521417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |