| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,845,459 | A→C | V229G (GTG→GGG) | ilvB ← | acetolactate synthase large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,845,459 | 0 | A | C | 94.8% | 318.1 / 8.7 | 96 | V229G (GTG→GGG) | ilvB | acetolactate synthase large subunit |
| Reads supporting (aligned to +/- strand): ref base A (4/1); new base C (49/42); total (53/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.46e-01 | |||||||||||
CTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGC > NZ_CP009273/3845323‑3845593 | ctGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCAc < 1:802149/138‑1 (MQ=255) aaaaTATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTg < 1:561993/139‑1 (MQ=255) atatAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCgg < 1:494550/139‑1 (MQ=255) aGTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCgg < 2:121610/135‑1 (MQ=255) aGTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCgg > 1:121610/1‑135 (MQ=255) gTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGTTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCa < 2:402850/139‑1 (MQ=255) gTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGgcgc < 1:457622/138‑1 (MQ=255) gTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCa < 2:26712/139‑1 (MQ=255) gTTGGTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCa < 1:505812/139‑1 (MQ=255) gTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCAtt < 2:617723/137‑1 (MQ=255) gTGCTGCGCACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCAtt > 1:617723/1‑137 (MQ=255) cgcACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGTCAGTTGCGCTTTCTCCGCCAGTTCCCGCCCCCGTg > 2:476119/1‑121 (MQ=255) cgcACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTg < 1:476119/121‑1 (MQ=255) cgcACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCacac > 1:1104133/1‑139 (MQ=255) cgcACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGAGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCacac > 2:278592/1‑139 (MQ=255) cACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACAccg < 2:527724/139‑1 (MQ=255) cACGCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACAccg < 1:594448/139‑1 (MQ=255) gCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACAccgccg > 1:335901/1‑139 (MQ=255) gCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACAccgccg > 1:64801/1‑139 (MQ=255) gCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACAccgccg > 2:1276352/1‑139 (MQ=255) gCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACAccgccg > 2:137695/1‑139 (MQ=255) gCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACAccgccg > 1:671486/1‑139 (MQ=255) gCCGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACAccgccg > 2:126241/1‑139 (MQ=255) ccGTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACcgccgc < 1:218065/139‑1 (MQ=255) gTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGccc < 1:437851/139‑1 (MQ=255) gTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGccc < 2:274877/139‑1 (MQ=255) gTGCATCCCCAGCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGccc < 2:15777/139‑1 (MQ=255) gCACACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAc > 1:909206/1‑139 (MQ=255) gCACACCCAGCGACAACGGATCCGCTTTTAGCAACATGCCCAGCGCCCTTAAAGTCATGATGGTAGGCAGTTTCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCTGATAAAGCAc > 1:1082325/1‑139 (MQ=255) cacaCCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCgg < 2:932931/101‑1 (MQ=255) cacaCCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCgg > 1:932931/4‑104 (MQ=255) caCCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCgg > 1:162844/2‑139 (MQ=255) caCCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCgg < 1:126241/138‑1 (MQ=255) cccAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGc > 2:766898/1‑139 (MQ=255) gCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGttt > 2:230272/1‑139 (MQ=255) gACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTgg < 1:230272/139‑1 (MQ=255) gACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTgg < 2:1104133/139‑1 (MQ=255) gACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTgg > 2:1000550/1‑139 (MQ=255) cAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCa < 2:1094861/139‑1 (MQ=255) cGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCg > 1:735669/1‑139 (MQ=255) cGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCg > 1:896364/1‑139 (MQ=255) cGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCg > 2:1279091/1‑139 (MQ=255) gATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTg < 1:39838/84‑1 (MQ=255) gATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTg > 2:39838/1‑84 (MQ=255) ggCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACcgccgc > 1:689552/1‑97 (MQ=255) ggCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACcgccgc < 2:689552/97‑1 (MQ=255) gCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATcgccg < 1:87347/138‑1 (MQ=255) cATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTgg < 2:1114570/116‑1 (MQ=255) cATGCCCAGCGCCATTAAAGTCATGGTGGTAGACAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTgg > 1:1114570/1‑116 (MQ=255) aTGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGccc > 2:995183/1‑93 (MQ=255) aTGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGccc < 1:995183/93‑1 (MQ=255) aTGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGt > 2:36720/1‑139 (MQ=255) aTGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGt > 1:215360/1‑139 (MQ=255) gCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCa > 2:1118902/1‑139 (MQ=255) aGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGaa < 1:949042/139‑1 (MQ=255) gcgcCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAAt > 1:437405/1‑139 (MQ=255) cgcCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATg > 1:687124/1‑139 (MQ=255) gcCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGc > 2:1242827/1‑139 (MQ=255) caaTTAGAGACGTGGTGGTAGGGAGTCGCGCTGTCTCCGCCAATTCACGCCCCCGTGCGGGCGCATTGATCACGCCGCCGCCCAGATAAAGCACCGGGCCTTGGGCAGCGTTAATCAGCGCCGCTGCGTCACGCATGCt < 2:767168/137‑1 (MQ=255) tCATGGTGGTAGGCTGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGCATGCTTTCTTCGCt < 2:634903/139‑1 (MQ=255) tCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCt < 1:1242827/139‑1 (MQ=255) aTGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCAtt > 2:734066/1‑56 (MQ=255) aTGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCAtt < 1:734066/56‑1 (MQ=255) aTGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTa > 2:1279907/1‑138 (MQ=255) aTGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTa > 2:130917/1‑138 (MQ=255) ggtggtAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAg > 1:49138/1‑139 (MQ=255) tAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc < 2:734587/77‑1 (MQ=255) tAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc > 1:734587/1‑77 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc > 2:753748/1‑70 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc < 1:753748/70‑1 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcg > 2:526201/1‑139 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcg > 2:556490/1‑139 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcg > 2:1037140/1‑139 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcg > 1:392974/1‑139 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcg > 1:268222/1‑139 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcg > 1:66141/1‑139 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACG‑ATGCTTTCTTCGCTAAAGGCGGGggcggcgg > 2:1222027/1‑139 (MQ=255) ttGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcg > 2:216255/1‑139 (MQ=255) gcgcTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGggcggcggc > 1:567519/1‑139 (MQ=255) cTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCttt < 1:1037140/139‑1 (MQ=255) cTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCttt < 1:137695/139‑1 (MQ=255) tctcCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCttttt < 1:1118902/138‑1 (MQ=255) ccAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCttttt < 1:768143/132‑1 (MQ=255) ccAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCttttt > 2:768143/1‑132 (MQ=255) cAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATa < 2:969784/139‑1 (MQ=255) ttCACGCCCCCGTGCGGGCGCCTTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCg > 1:167351/1‑139 (MQ=255) ttCACGCCCCCGTGCGGGCGCATTGATCACACcgccgc > 1:778946/1‑38 (MQ=255) ttCACGCCCCCGTGCGGGCGCATTGATCACACcgccgc < 2:778946/38‑1 (MQ=255) ttCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTttc < 2:1163928/99‑1 (MQ=255) ttCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTttc > 1:1163928/1‑99 (MQ=255) ttCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCg > 1:191847/1‑139 (MQ=255) ttCACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCg > 2:1063622/1‑139 (MQ=255) cACGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCggg > 2:763431/1‑139 (MQ=255) aCGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCggg < 1:1279065/138‑1 (MQ=255) aCGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCggg < 2:64801/138‑1 (MQ=255) aCGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGc < 2:49138/139‑1 (MQ=255) | CTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGC > NZ_CP009273/3845323‑3845593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |