Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 3,914,592 T→C intergenic (‑43/+4) atpE ← / ← atpB F0F1 ATP synthase subunit C/F0F1 ATP synthase subunit A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,914,5920TC94.1% 236.5 / 1.7 68intergenic (‑43/+4)atpE/atpBF0F1 ATP synthase subunit C/F0F1 ATP synthase subunit A
Reads supporting (aligned to +/- strand):  ref base T (2/2);  new base C (32/32);  total (34/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAA  >  NZ_CP009273/3914460‑3914727
                                                                                                                                    |                                                                                                                                       
gATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTa                                                                                                                                   <  1:644968/139‑1 (MQ=255)
  tGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAAt                                                                                                                                 <  1:575771/139‑1 (MQ=255)
    ccGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATg                                                                                                                                <  1:1276971/138‑1 (MQ=255)
            gATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGa                                                                                                                       <  2:920981/139‑1 (MQ=255)
            gATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGa                                                                                                                       >  1:74392/1‑139 (MQ=255)
             aTCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGAc                                                                                                                      >  1:195097/1‑139 (MQ=255)
             aTCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGAc                                                                                                                      >  1:796150/1‑139 (MQ=255)
             aTCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGAc                                                                                                                      >  1:240378/1‑139 (MQ=255)
             aTCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGAc                                                                                                                      >  2:980810/1‑139 (MQ=255)
                  agcaCCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCAt                                                                                                                 <  2:323618/139‑1 (MQ=255)
                    caCCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATc                                                                                                                >  1:874134/1‑138 (MQ=255)
                         aTTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATc                                                                                                                >  2:1003145/1‑133 (MQ=255)
                         aTTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATc                                                                                                                <  1:1003145/133‑1 (MQ=255)
                         aTTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGa                                                                                                              >  2:318092/1‑135 (MQ=255)
                         aTTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGa                                                                                                              >  1:477352/1‑135 (MQ=255)
                             ccgccAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGa                                                                                                      <  2:661979/139‑1 (MQ=255)
                               gccAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACg                                                                                                    <  2:317936/139‑1 (MQ=255)
                               gccAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACg                                                                                                    <  2:988254/139‑1 (MQ=255)
                                    aCCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGt                                                                                               <  1:578853/139‑1 (MQ=255)
                                        atcatcACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAg                                                                                            >  1:907883/1‑138 (MQ=255)
                                         tcatcaCAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGaa                                                                                          <  2:907883/139‑1 (MQ=255)
                                            tcaCAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGATAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCa                                                                                       <  1:550209/139‑1 (MQ=255)
                                                  cGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCatg                                                                                     >  1:705701/1‑135 (MQ=255)
                                                    gCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCatgaagatg                                                                               <  2:597481/139‑1 (MQ=255)
                                                       gCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCatgaagatgaag                                                                            >  1:941406/1‑139 (MQ=255)
                                                             tACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTg                                                                       <  1:688708/138‑1 (MQ=255)
                                                             tACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTg                                                                       <  2:887206/138‑1 (MQ=255)
                                                             tACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTg                                                                       <  1:176977/138‑1 (MQ=255)
                                                             tACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTg                                                                       <  2:416600/138‑1 (MQ=255)
                                                               cagcagATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCa                                                                     <  1:861134/138‑1 (MQ=255)
                                                               cagcagATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCa                                                                     <  2:1070502/138‑1 (MQ=255)
                                                               cagcagATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCa                                                                     <  2:796150/138‑1 (MQ=255)
                                                               cagcagATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAg                                                                    >  1:389229/1‑139 (MQ=255)
                                                                  cagATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCg                                                                  >  2:877870/1‑138 (MQ=255)
                                                                     aTCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAAt                                                              >  1:1197862/1‑139 (MQ=255)
                                                                     aTCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAAt                                                              >  1:1004467/1‑139 (MQ=255)
                                                                     aTCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAAt                                                              >  2:884285/1‑139 (MQ=255)
                                                                     aTCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAAt                                                              >  2:983820/1‑139 (MQ=255)
                                                                     aTCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAAt                                                              >  1:680356/1‑139 (MQ=255)
                                                                     aTCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAAt                                                              >  1:347830/1‑139 (MQ=255)
                                                                       ccATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCa                                                                     <  1:804920/130‑1 (MQ=255)
                                                                       ccATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCa                                                                     >  2:804920/1‑130 (MQ=255)
                                                                        cATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGAt                                                           <  2:934419/139‑1 (MQ=255)
                                                                            ttCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCg                                                                                                               >  1:651433/1‑83 (MQ=255)
                                                                            ttCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCg                                                                                                               <  2:651433/83‑1 (MQ=255)
                                                                                    ttCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGa                                                >  2:1284984/1‑138 (MQ=255)
                                                                                         tGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGaaaa                                             <  2:874124/136‑1 (MQ=255)
                                                                                         tGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGaaaa                                             >  1:874124/1‑136 (MQ=255)
                                                                                               tctcCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACg                                    >  2:642732/1‑139 (MQ=255)
                                                                                               tctcCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACg                                    >  1:1263272/1‑139 (MQ=255)
                                                                                               tctcCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACg                                    >  2:248591/1‑139 (MQ=255)
                                                                                               tctcCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACg                                    >  2:276345/1‑139 (MQ=255)
                                                                                               tctcCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTCCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACg                                    >  1:1088016/1‑139 (MQ=255)
                                                                                                ctcCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACgg                                   >  1:1283418/1‑139 (MQ=255)
                                                                                                   cAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGc                                  <  2:195097/137‑1 (MQ=255)
                                                                                                        tgtttCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTc                            <  1:980810/138‑1 (MQ=255)
                                                                                                         gtttCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCa                           <  2:8270/138‑1 (MQ=255)
                                                                                                          tttCAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAgg                         <  1:1113229/139‑1 (MQ=255)
                                                                                                             cAGTTAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATc                      >  2:936770/1‑139 (MQ=255)
                                                                                                                ttAAAACGTAGTAGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCAc                   >  2:83722/1‑139 (MQ=255)
                                                                                                                       gtagtaGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGacc            <  2:941406/139‑1 (MQ=255)
                                                                                                                       gtagtaGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGacc            <  2:1004467/139‑1 (MQ=255)
                                                                                                                       gtagtaGTGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGacc            <  1:83722/139‑1 (MQ=255)
                                                                                                                         agtagtGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGaccac          >  2:105135/1‑139 (MQ=255)
                                                                                                                           tagtGTTGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGAccacca        <  2:1218067/139‑1 (MQ=255)
                                                                                                                                ttGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTg                                                                       <  1:742668/71‑1 (MQ=255)
                                                                                                                                ttGGCAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTg                                                                       >  2:742668/1‑71 (MQ=255)
                                                                                                                                  ggTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCaa  <  1:781041/138‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                       
GATGCCGATACCGATCGCAGCACCGATTGCCGCCAGACCCATCATCACAGCGGCAGCCATGTACAGCAGATCCATATTCAGGTTTTCCATGACAGTCTCCAGTTTGTTTCAGTTAAAACGTAGTAGTGTTGGTAAATTAATGTTCTTCAGACGCCATCGACAGATAGACGATCGTCAGAACCATGAAGATGAAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAA  >  NZ_CP009273/3914460‑3914727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: