Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 3,994,419 | T→C | intergenic (‑3/‑159) | yigE ← / → ysgD | phosphodiester glycosidase family protein/protein YsgD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 3,994,419 | 0 | T | C | 95.5% | 232.3 / 1.2 | 66 | intergenic (‑3/‑159) | yigE/ysgD | phosphodiester glycosidase family protein/protein YsgD |
Reads supporting (aligned to +/- strand): ref base T (1/2); new base C (34/29); total (35/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.97e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
GTCAGCGTCGGATCTGAGAGTGCGCAATCATCAGCGGCAACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAATCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTATAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTAACATGCGCGCACG > NZ_CP009273/3994286‑3994554 | gTCAGCGTCGGATCTGAGAGTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTc < 2:1167614/139‑1 (MQ=255) tCAGCGTCGGATCTGAGAGTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTcc > 1:1206863/1‑139 (MQ=255) aGCGTCGGATCTGAGAGTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTg > 1:876527/1‑139 (MQ=255) aTCTGAGAGTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTgg > 2:440586/1‑138 (MQ=255) agagTGCGCAATCATCAGCGTCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGATAAAAACCCGTTTGATATTCAAGGTGATCATTCCTTTACCAATGAGTACCTGATGCGCCATTACCGCTCCTGGATGTTGGa < 2:599080/135‑1 (MQ=255) agagTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGa < 2:876527/135‑1 (MQ=255) agagTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGAtttt > 1:132911/1‑139 (MQ=255) agagTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGAtt < 1:66382/137‑1 (MQ=255) agagTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGCGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGa < 1:841372/135‑1 (MQ=255) agTGCGCAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGAtttttt < 2:132911/139‑1 (MQ=255) gcgcAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTAt > 2:325374/1‑139 (MQ=255) gcgcAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTAt > 1:432393/1‑139 (MQ=255) cgcAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATc > 1:1260187/1‑139 (MQ=255) cgcAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATc > 2:1094046/1‑139 (MQ=255) cgcAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATc > 1:692396/1‑139 (MQ=255) gcAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATcc < 1:1241307/139‑1 (MQ=255) gcAATCATCAGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATcc < 2:598235/139‑1 (MQ=255) atcaGCGGCAACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAATCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTATAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAg < 2:1157700/139‑1 (MQ=255) aGCGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGa > 2:1195380/1‑139 (MQ=255) cGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGAcc < 2:432393/139‑1 (MQ=255) cGGCGACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGAcc > 1:378214/1‑139 (MQ=255) cgaCAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCtt > 1:1059931/3‑138 (MQ=255) cgaCAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCtt > 1:166858/3‑138 (MQ=255) tAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGcgcg < 1:1001084/139‑1 (MQ=255) tAAGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGcgcg < 2:378214/139‑1 (MQ=255) aGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGcgcg > 2:764258/1‑137 (MQ=255) aGGTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGa < 1:104852/138‑1 (MQ=255) ggTGAGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAg < 1:35746/139‑1 (MQ=255) aGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTc < 1:325374/138‑1 (MQ=255) aGGGCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTc < 2:1206863/138‑1 (MQ=255) ggCGAGAAAAACCCGTTTGAGATTCGAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAAc > 2:141545/1‑139 (MQ=255) ggCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAg < 1:290815/103‑1 (MQ=255) ggCGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAg > 2:290815/1‑103 (MQ=255) cGAGAAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTa < 1:556592/139‑1 (MQ=255) agaAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTc > 2:1058478/1‑132 (MQ=255) agaAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTc < 1:1058478/132‑1 (MQ=255) agaAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTAtt > 2:1003862/1‑139 (MQ=255) gaAAAACCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCTTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTg > 1:588935/1‑139 (MQ=255) acccGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCtg < 2:180808/137‑1 (MQ=255) ccGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCtgtg < 2:237537/139‑1 (MQ=255) ccGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCtgtg < 1:689697/139‑1 (MQ=255) gagaTTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGtt < 2:1231202/138‑1 (MQ=255) aaGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAg > 2:696143/1‑78 (MQ=255) aaGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAg < 1:696143/78‑1 (MQ=255) tGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGtt < 1:1003862/139‑1 (MQ=255) tttACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCaaaa > 2:531110/1‑139 (MQ=255) tACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTa < 1:1287620/100‑1 (MQ=255) tACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTa > 2:1287620/1‑100 (MQ=255) tACCAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAAtt > 1:789965/1‑139 (MQ=255) ccAATGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAAtttt > 1:80106/1‑139 (MQ=255) cAATGAGTAGCTGATGCGCCATTATAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTg < 2:1273148/139‑1 (MQ=255) aTGAGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCt > 1:1020843/1‑139 (MQ=255) tGAGTAGCTGATGCGCCATTATAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTg > 1:603815/1‑139 (MQ=255) aGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTg > 1:543320/1‑134 (MQ=255) aGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTg < 2:543320/134‑1 (MQ=255) aGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGc > 2:316968/1‑139 (MQ=255) aGTAGCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGc > 2:993139/1‑139 (MQ=255) gCTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTaa > 1:261077/1‑139 (MQ=255) cTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTaa > 2:809498/1‑138 (MQ=255) cTGATGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTAAc < 2:1261633/139‑1 (MQ=255) aTGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTAACATg > 2:1230444/1‑139 (MQ=255) aTGCGCCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTAACATg > 1:1167911/1‑139 (MQ=255) gcgcCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGc < 2:457166/104‑1 (MQ=255) gcgcCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGc > 1:457166/1‑104 (MQ=255) gcgcCATTACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTAACATgcg > 1:572707/1‑139 (MQ=255) ttACAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTAACATGCGCGCACg < 1:764258/139‑1 (MQ=255) | GTCAGCGTCGGATCTGAGAGTGCGCAATCATCAGCGGCAACAGCAAACAAGGGAAGTAAGGTGAGGGCGAGAAAAATCCGTTTGAGATTCAAGGTGATCATTCCTTTACCAATGAGTAGCTGATGCGCCATTATAGGTCCTGGATGTGGGATTTTTTTATCCTGTTAGCGACCTTGACGAGTACCAAAAAGCGCGAAGTTCAACTATTGTTCTGTGGTGTTCTGTTGCGTGTTGACGGCAAAATTTTGCTGGCGTAACATGCGCGCACG > NZ_CP009273/3994286‑3994554 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |