Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 409,497 T→C R571R (CGA→CGG sbcC ← exonuclease subunit SbcC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273409,4970TC96.8% 208.2 / ‑1.0 62R571R (CGA→CGGsbcCexonuclease subunit SbcC
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (28/32);  total (29/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01

GCTGAGTAACCGCAGCTGGCGTTCGTGCTCATCTTGTGCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGTCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCAGTAATCGAGACTGAT  >  NZ_CP009273/409362‑409627
                                                                                                                                       |                                                                                                                                  
gCTGAGTAACCGCAGCTGGCGTTCGTGCTCATCTTGTGCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCgg                                                                                                                                 <  1:205954/139‑1 (MQ=255)
              gCTGGCGTTCGTGCTCATCTTGTGCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTc                                                                                                                   >  2:883110/1‑139 (MQ=255)
              gCTGGCGTTCGTGCTCATCTTGTGCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTc                                                                                                                   >  1:173981/1‑139 (MQ=255)
                       cGTGCTCATCTTGTGCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTtcat                                                                                                           <  2:868089/138‑1 (MQ=255)
                       cGTGCTCATCTTGTGCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTtcat                                                                                                           >  1:309789/1‑138 (MQ=255)
                       cGTGCTCATCTTGTGAATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTtcat                                                                                                           <  2:455555/138‑1 (MQ=255)
                                    tgCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAgctgc                                                                                             >  1:475680/1‑139 (MQ=255)
                                    tgCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAgctg                                                                                              <  2:309789/138‑1 (MQ=255)
                                      cATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAgctgct                                                                                            <  2:225228/138‑1 (MQ=255)
                                      cATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAgctgct                                                                                            <  2:527217/138‑1 (MQ=255)
                                        tccatccaCTGTTTAATATCGTCCATTGGCTGCATGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAATTTCTTGCTCATCTTGCCGGTTTCTTTGCGCTTCGTTTTCTTCACGCTGCAGCTGCTTTg                                                                                         >  2:133720/1‑139 (MQ=255)
                                        tCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCgg                                                                                                                                 >  2:734224/1‑99 (MQ=255)
                                        tCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCgg                                                                                                                                 <  1:734224/99‑1 (MQ=255)
                                        tCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTg                                                                                         >  1:503862/1‑139 (MQ=255)
                                         ccAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGt                                                                                        >  2:1282851/1‑139 (MQ=255)
                                           aGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTa                                                                                      <  2:155974/139‑1 (MQ=255)
                                             ccACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAgctg                                                                                              <  2:122278/129‑1 (MQ=255)
                                             ccACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAgctg                                                                                              >  1:122278/1‑129 (MQ=255)
                                             ccACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATg                                                                                    <  2:1031977/139‑1 (MQ=255)
                                                  gTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTc                                                                               <  1:725655/139‑1 (MQ=255)
                                                     gAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCa                                                                             <  2:890725/138‑1 (MQ=255)
                                                     gAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCa                                                                             <  2:1085995/138‑1 (MQ=255)
                                                      aaTATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGt                                                                           >  1:437483/1‑139 (MQ=255)
                                                          tCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGc                                                                        <  2:161602/138‑1 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTa                                                                                      >  1:652712/1‑121 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTa                                                                                      <  2:652712/121‑1 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCa                                                                             >  2:1182325/1‑130 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCa                                                                             <  1:1182325/130‑1 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTg                                                                         <  1:1174483/134‑1 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTg                                                                         >  2:1174483/1‑134 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCAc                                                                    >  2:1138727/1‑139 (MQ=255)
                                                             tCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCAc                                                                    >  2:1290369/1‑139 (MQ=255)
                                                                  tGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGc                                                               >  1:88870/1‑139 (MQ=255)
                                                                  tGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCAAGTaac                                                               >  2:685088/1‑137 (MQ=255)
                                                                     cTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTc                                                            <  2:56532/139‑1 (MQ=255)
                                                                       gCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTa                                                                 <  1:281476/132‑1 (MQ=255)
                                                                       gCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTa                                                                 >  2:281476/1‑132 (MQ=255)
                                                                        cAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCa                                                         <  2:475680/139‑1 (MQ=255)
                                                                           ggTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACct                                                      <  2:88870/139‑1 (MQ=255)
                                                                                       gCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGTCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGc                                                                        <  1:930400/109‑1 (MQ=255)
                                                                                       gCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGTCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGc                                                                        >  2:930400/1‑109 (MQ=255)
                                                                                       gCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGc                                          >  2:378210/1‑139 (MQ=255)
                                                                                          ggCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCg                                                           >  1:796361/1‑119 (MQ=255)
                                                                                          ggCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCg                                                           <  2:796361/119‑1 (MQ=255)
                                                                                           gCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGc                                                          <  1:795934/119‑1 (MQ=255)
                                                                                           gCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGc                                                          >  2:795934/1‑119 (MQ=255)
                                                                                                     cTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTc                                                                               <  1:1148740/88‑1 (MQ=255)
                                                                                                     cTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTc                                                                               >  2:1148740/1‑88 (MQ=255)
                                                                                                     cTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGtt                            >  1:990120/1‑139 (MQ=255)
                                                                                                            ttgttgAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAgc                     <  2:495594/139‑1 (MQ=255)
                                                                                                               ttgAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAgcgc                   <  1:883110/138‑1 (MQ=255)
                                                                                                               ttgAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAgcgc                   <  1:951680/138‑1 (MQ=255)
                                                                                                                 gAGTAAGTGCTTGCTCATCTTGCTGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCa                 <  2:512041/138‑1 (MQ=255)
                                                                                                                 gAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCa                 <  2:510671/138‑1 (MQ=255)
                                                                                                                 gAGTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCAg                >  1:181709/1‑139 (MQ=255)
                                                                                                                   gTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCAc                                                        >  1:95484/1‑97 (MQ=255)
                                                                                                                   gTAAGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCAc                                                        <  2:95484/97‑1 (MQ=255)
                                                                                                                      aGTGCTTGCTCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCAGTAAt            <  1:1276132/138‑1 (MQ=255)
                                                                                                                         gcttgctCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCAGTAATc           >  1:697208/1‑136 (MQ=255)
                                                                                                                         gcttgctCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTAACTTCGTTTTCCAGCGCCAGTAANNnnga       >  2:641081/1‑139 (MQ=255)
                                                                                                                            tgctCATCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCAGTAATCGAGACt     >  1:40649/1‑139 (MQ=255)
                                                                                                                                 aTCTTGCCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCAGTAATCGAGACTGAt  <  1:378210/137‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                  
GCTGAGTAACCGCAGCTGGCGTTCGTGCTCATCTTGTGCATCCAGCCACGGTTGAATATCGTCCAGTGGCTGCAAGGTGATATTGAGGCTGGCCGTGACGGCTTGCCATTGTTGAGTAAGTGCTTGCTCATCTTGTCGGAGGCTTTGCGCTTCGTTTTCATCACGCTGAAGCTGCTTTGTTATGGCGTCCAGTTGCCCACGTAGCGTCGCACCTTCTTCACCGAGCTTTTTAACTTCGTTTTCCAGCGCCAGTAATCGAGACTGAT  >  NZ_CP009273/409362‑409627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: