Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 412,148 | G→A | V87V (GTC→GTT) | sbcD ← | exonuclease subunit SbcD |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 412,148 | 0 | G | A | 97.2% | 255.0 / ‑2.9 | 71 | V87V (GTC→GTT) | sbcD | exonuclease subunit SbcD |
Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (40/29); total (42/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.10e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
AAAAACGGAATGGGGCACAGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCGACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCACCGGCAACAATA > NZ_CP009273/412014‑412280 | aaaaaCGGAATGGGGCACAGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAAcc > 1:526466/1‑138 (MQ=255) aaaaaCGGAATGGGGCACAGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAAcc > 1:371472/1‑138 (MQ=255) cGGAATGTGGCACAGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCa < 2:734261/139‑1 (MQ=255) ggAATGGGGCACAGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAAc < 1:1031882/131‑1 (MQ=255) ggAATGGGGCACAGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAAc > 2:1031882/1‑131 (MQ=255) cacaGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTg < 2:7119/139‑1 (MQ=255) cacaGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTg < 2:461612/139‑1 (MQ=255) aGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGc > 2:956999/1‑137 (MQ=255) cTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTac < 2:75648/139‑1 (MQ=255) tGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTac > 2:192907/1‑138 (MQ=255) tGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTac > 2:1138372/1‑138 (MQ=255) tGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTac > 2:1251995/1‑138 (MQ=255) ggCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCGACCGAGTCATGGTTTCCTGCCAGTACCACCAGAt > 2:519984/1‑139 (MQ=255) ggCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGAt > 1:568649/1‑139 (MQ=255) ggCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGAt > 2:620556/1‑139 (MQ=255) ggCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGAt > 1:449428/1‑139 (MQ=255) cccGTCGCGACGAGGCAAGATTTGCGGCGCATGTTCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAg > 1:65370/1‑139 (MQ=255) cccGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGttt < 2:498917/115‑1 (MQ=255) cccGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGttt > 1:498917/1‑115 (MQ=255) ccGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCt > 2:1002689/1‑117 (MQ=255) ccGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCt < 1:1002689/117‑1 (MQ=255) gCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAg < 2:1285392/118‑1 (MQ=255) gCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAg > 1:1285392/1‑118 (MQ=255) gcggcgCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGacaa > 2:383256/1‑138 (MQ=255) cgcATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACaaaa < 1:242106/139‑1 (MQ=255) cgcATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACaaaa < 2:526466/139‑1 (MQ=255) cATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACg < 1:956999/139‑1 (MQ=255) ggCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAAc < 1:285685/60‑1 (MQ=255) ggCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAAc > 2:285685/1‑60 (MQ=255) ggCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTac < 1:498416/84‑1 (MQ=255) ggCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTac > 2:498416/1‑84 (MQ=255) ggCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGAcaacaa > 1:1176057/1‑122 (MQ=255) ggCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGAcaacaa < 2:1176057/122‑1 (MQ=255) gCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGc > 1:1163522/1‑139 (MQ=255) gCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGc < 1:1088087/139‑1 (MQ=255) aCCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTCTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCggg < 2:320929/139‑1 (MQ=255) cACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCg > 1:954443/1‑139 (MQ=255) tagtaTTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACt > 1:211461/1‑139 (MQ=255) tagtaTTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACt > 2:990093/1‑139 (MQ=255) aGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGcc > 1:37176/1‑60 (MQ=255) aGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGcc < 2:37176/60‑1 (MQ=255) aGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGggcggc > 2:264448/1‑138 (MQ=255) aGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGggcggc > 1:781761/1‑138 (MQ=255) aGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGggcggc > 1:1256947/1‑138 (MQ=255) gAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAg > 2:978261/1‑139 (MQ=255) gAACGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAg > 1:442657/1‑139 (MQ=255) cGCCATGATATCGCGCGATTCATTCAGGGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCg < 2:583532/139‑1 (MQ=255) cGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGGGTCATGGTTTCCTGcc > 2:542631/1‑55 (MQ=255) cGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGcc < 1:542631/55‑1 (MQ=255) cGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACaaaa > 2:730788/1‑100 (MQ=255) cGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACaaaa < 1:730788/100‑1 (MQ=255) cGCCATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCg < 1:383256/139‑1 (MQ=255) ccATGATATCGCGCGATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCgg > 2:1214492/1‑138 (MQ=255) cgcgcgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGac < 2:504704/82‑1 (MQ=255) cgcgcgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGac > 1:504704/1‑82 (MQ=255) cgcgcgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGaaaa > 1:1138946/1‑138 (MQ=255) cgcgcgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGaaaa > 2:811378/1‑138 (MQ=255) cgcgATTCATTCAGCGTGGCGACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACAt > 2:377890/1‑139 (MQ=255) cgcgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACAt > 1:630338/1‑139 (MQ=255) cgcgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACAt > 1:1182277/1‑139 (MQ=255) cgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCa < 1:879680/139‑1 (MQ=255) cgATTCATTCAGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCa < 1:896722/139‑1 (MQ=255) ttcattcaGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACaaaa < 1:1151/82‑1 (MQ=255) ttcattcaGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACaaaa > 2:1151/1‑82 (MQ=255) ttcattcaGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCACCg > 2:1158338/1‑139 (MQ=255) attcaGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCACCGGc < 1:1138372/138‑1 (MQ=255) attcaGCGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCACCGGc < 1:990093/138‑1 (MQ=255) cGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCACCGGCAACaata < 2:781761/139‑1 (MQ=255) cGTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCACCGGCAACaat > 2:751644/1‑138 (MQ=255) gTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGc > 1:395894/1‑109 (MQ=255) gTGGCAACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGc < 2:395894/109‑1 (MQ=255) | AAAAACGGAATGGGGCACAGCACTGCGCCTGGCGTCCCGTCGCGACGAGGCAAGATTTGCGGCGCATGTCCGGCGCTGGCGACCACGGTAGTATTGAGGAACGCCATGATATCGCGCGATTCATTCAGCGTGGCGACCGAGTCATGGTTTCCTGCCAGTACCACCAGATGACAGCCAGTTTGCTGTAAATTGACAACAAAACGGTTGTATAACGTGCGGGCGTAACTGGGCGGCGAGCCGGTATCGAAAACATCACCGGCAACAATA > NZ_CP009273/412014‑412280 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |