Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 443,081 C→T L27L (CTG→CTA cyoE ← heme o synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273443,0810CT98.4% 231.2 / ‑7.2 62L27L (CTG→CTAcyoEheme o synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (31/30);  minor base A (0/1);  total (31/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

GTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGCAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCA  >  NZ_CP009273/442950‑443205
                                                                                                                                    |                                                                                                                             
gTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAAt                                                                                                                         <  1:922567/138‑1 (MQ=255)
     ttCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATccccc                                                                                                                    >  1:416761/1‑138 (MQ=255)
       ccATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCaa                                                                                                                  <  1:889673/138‑1 (MQ=255)
         aTCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCa                                                                                                               <  2:16520/139‑1 (MQ=255)
              tCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCAcc                                                                                                             >  2:1147370/1‑136 (MQ=255)
                     atatCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGt                                                                                                   >  1:1258088/1‑139 (MQ=255)
                            tGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGt                                                                                                   >  1:1083889/1‑132 (MQ=255)
                            tGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGt                                                                                                   <  2:1083889/132‑1 (MQ=255)
                                gATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAgatg                                                                                        <  1:120405/139‑1 (MQ=255)
                                   gTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGatgatg                                                                                     >  2:510731/1‑139 (MQ=255)
                                      ggtgttAAACACACACCACGACGCCACATCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGAGAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCCATCAACGCGATCATGTTGCCAAAGATGATGCCt                                                                                 >  2:284321/3‑139 (MQ=255)
                                        tgttAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTgg                                                                               >  2:1021518/1‑139 (MQ=255)
                                        tgttAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTgg                                                                               >  1:494491/1‑139 (MQ=255)
                                            aaaCACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTc                                                                           >  2:183955/1‑139 (MQ=255)
                                                acacaACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTa                                                                       <  1:737598/139‑1 (MQ=255)
                                                  acaACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACt                                                                     <  2:305593/139‑1 (MQ=255)
                                                    aaCCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTg                                                                   >  2:338116/1‑139 (MQ=255)
                                                     aCCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGc                                                                  <  2:494491/139‑1 (MQ=255)
                                                         gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGtt                                                                        >  2:805017/1‑129 (MQ=255)
                                                         gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGtt                                                                        <  1:805017/129‑1 (MQ=255)
                                                         gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGt                                                              <  2:33386/139‑1 (MQ=255)
                                                         gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGt                                                              <  2:927716/139‑1 (MQ=255)
                                                         gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGt                                                              <  1:1147370/139‑1 (MQ=255)
                                                         gACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGt                                                              <  2:711804/139‑1 (MQ=255)
                                                          aCGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTa                                                             >  1:124932/1‑139 (MQ=255)
                                                          aCGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTa                                                             <  1:1185268/139‑1 (MQ=255)
                                                              cacaACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGc                                                         >  2:360471/1‑139 (MQ=255)
                                                                caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGt                                                              >  1:1098799/1‑132 (MQ=255)
                                                                caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGt                                                              <  2:1098799/132‑1 (MQ=255)
                                                                caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTa                                                             <  1:752455/133‑1 (MQ=255)
                                                                caACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTa                                                             >  2:752455/1‑133 (MQ=255)
                                                                 aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTa                                                      <  2:1174944/139‑1 (MQ=255)
                                                                 aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTa                                                      <  1:238610/139‑1 (MQ=255)
                                                                 aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTa                                                      <  1:518570/139‑1 (MQ=255)
                                                                 aaCCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTa                                                      <  2:805609/139‑1 (MQ=255)
                                                                   ccAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTaaa                                                    <  2:117811/139‑1 (MQ=255)
                                                                      gTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAAcat                                                 >  1:345031/1‑139 (MQ=255)
                                                                           acCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAgatg                                                                                        >  2:1098454/1‑96 (MQ=255)
                                                                           acCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAgatg                                                                                        <  1:1098454/96‑1 (MQ=255)
                                                                                      cGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGctct                                  >  2:507329/1‑138 (MQ=255)
                                                                                       gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCcagc                                                                                                                               <  1:1039277/45‑1 (MQ=255)
                                                                                       gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCcagc                                                                                                                               >  2:1039277/1‑45 (MQ=255)
                                                                                       gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGctct                                  >  1:627824/1‑137 (MQ=255)
                                                                                       gtgtAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGctct                                  >  2:494319/1‑137 (MQ=255)
                                                                                          tAGAAAAAAAGGGATAAATCATGGCTGCCTTTTGAGCCAGGTAGGACCCCCCCAATCCCCGAGATCGGGTTGCAAAAGATGTTGCTTGTTTTCGTTCTTTGCAGTTTTTTTTTAAACATCATAACCGCCGCTCTTAGTg                             <  2:1258088/139‑1 (MQ=255)
                                                                                                    ggggATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGc                                                                  >  2:218039/1‑92 (MQ=255)
                                                                                                    ggggATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGc                                                                  <  1:218039/92‑1 (MQ=255)
                                                                                                    ggggATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtg                   >  2:897346/1‑139 (MQ=255)
                                                                                                    ggggATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtg                   >  1:466784/1‑139 (MQ=255)
                                                                                                    ggggATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtg                   >  1:170162/1‑139 (MQ=255)
                                                                                                     gggATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtgt                  >  2:783645/1‑139 (MQ=255)
                                                                                                     gggATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtgt                  >  2:1105956/1‑139 (MQ=255)
                                                                                                     gggAAAAACAATGCCTCCCTTTGGGGGCCAGAAGGAACCCCCAAACCACCGAAATCGGGTTCCAAAAGATGTGCCTTGTTTTCTTTCTTTGAAGTTTTTTTTAAAACATAATAACCGCCGCTCTTAGTGCATCATCAtg                   <  2:940469/139‑1 (MQ=255)
                                                                                                       gATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTa                                                             >  1:836773/1‑94 (MQ=255)
                                                                                                       gATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTa                                                             <  2:836773/94‑1 (MQ=255)
                                                                                                       gATAATCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCAtgttg                >  1:642243/1‑139 (MQ=255)
                                                                                                          aaTCAATGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAg             >  1:619529/1‑139 (MQ=255)
                                                                                                             catggctccCCTTGGAGGCCAGTAGGACCCCCCCAACCCCCGATATCAGGTGGCAAAAGATGATGCCTGTTTTCTTTCTTGGCAGTTTTTTCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTg          <  1:783645/135‑1 (MQ=255)
                                                                                                             cAATGCTCCCTTTGGAGGCCAGTAGGAACCCCCCAATCCCCGAGATCGGGTTGCAAAAGATGATCCTTGTTTTCTTTTTTGGCGGGTTTTGCTAAAACAACATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTg          <  1:183955/139‑1 (MQ=255)
                                                                                                               aTGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTa                                                      >  2:386526/1‑93 (MQ=255)
                                                                                                               aTGCTGCCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTa                                                      <  1:386526/93‑1 (MQ=255)
                                                                                                                  ctgcCCTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCACCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGt      <  1:943265/138‑1 (MQ=255)
                                                                                                                  ctgcCCTTTGAGGCCAGTAGGAACCCCCCAACCCCCGAGATCAGTTTGCAAAAGATGATGCCTGTTTCCTTTACTTGCGGGTATTGTTAAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGt      <  1:1137314/138‑1 (MQ=255)
                                                                                                                     cccTTTGAGGCCAGTAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCca  >  1:287134/1‑139 (MQ=255)
                                                                                                                                    |                                                                                                                             
GTCCTTTCCATCTTTCTGTCGATATCCCTGTCGATGTAGTTGTTAAACACACAACCCGACGCCACAACCAGTGACACCCCAACCAGCGTGTAGATAAACAGGGGATAATCAATGCTGCCCTTTGAGGCCAGCAGGAATCCCCCAATCACCGAGATCAGGTTGCCAAAGATGATGCCTGGTTTCGTTACTTGCAGGTATTGCTTAAACATCATAACCGCCGCTCTTAGTGCATCATCATGTTGTAGTTGAGGTTCCA  >  NZ_CP009273/442950‑443205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: