Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 883,821 | C→T | V485V (GTG→GTA) | ybjL ← | aspartate:alanine antiporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 883,821 | 0 | C | T | 97.0% | 222.1 / ‑2.3 | 68 | V485V (GTG→GTA) | ybjL | aspartate:alanine antiporter |
Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (32/33); total (33/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 |
GGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGC > NZ_CP009273/883685‑883951 | ggATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTAc > 1:969348/1‑139 (MQ=255) aTGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCTCGGGTACCa < 2:42938/139‑1 (MQ=255) ttACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGa < 1:1279608/138‑1 (MQ=255) cGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGAcaa > 2:294798/1‑139 (MQ=255) gAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGAcaat < 1:294798/139‑1 (MQ=255) cTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGAcaatcaa > 2:247392/1‑139 (MQ=255) tGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACt > 2:826964/1‑129 (MQ=255) tGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACt < 1:826964/129‑1 (MQ=255) tATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACaatcaatc < 2:950755/138‑1 (MQ=255) tATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTACGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATcc > 2:980985/1‑139 (MQ=255) tCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCgg < 1:114284/139‑1 (MQ=255) gatCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCaa > 1:1020670/1‑138 (MQ=255) gatCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCaa > 1:1140465/1‑138 (MQ=255) gatCTCCATTGCCCGCGCGCAGGTAGGTGCGCCCCTCATCGCGCCGAACAACAGCGCGCGGTTCTTTCGCTATACATAAGCACCGAACAAGAACCAGATAATCACGGGTACCAGACTGACAATCAATCCGGCAATCaa > 2:894488/1‑138 (MQ=255) ctcCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATc > 1:868822/1‑139 (MQ=255) tcCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGTACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCt > 2:558910/1‑139 (MQ=255) cATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGa > 1:141987/1‑139 (MQ=255) ttGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGAcc > 2:978713/1‑139 (MQ=255) ttGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGAcc < 1:276302/139‑1 (MQ=255) ttGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGAcc > 2:843922/1‑139 (MQ=255) ccGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTAc < 1:1058726/100‑1 (MQ=255) ccGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTAc > 2:1058726/1‑100 (MQ=255) gcgcgcAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCCCCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAAt < 1:1100848/139‑1 (MQ=255) gcgcgcAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAAt < 1:441005/139‑1 (MQ=255) cgcgcAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATc < 1:682468/139‑1 (MQ=255) aGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGcc < 2:141987/139‑1 (MQ=255) cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATACCCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 2:845797/138‑1 (MQ=255) cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 1:247392/138‑1 (MQ=255) cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 1:843922/138‑1 (MQ=255) cGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAgg < 1:205714/138‑1 (MQ=255) gcgcCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGt < 2:562483/139‑1 (MQ=255) atcatTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCgg > 2:768149/1‑97 (MQ=255) atcatTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCgg < 1:768149/97‑1 (MQ=255) cGAACAAAAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTAcc < 2:546821/139‑1 (MQ=255) gAACAACAGCGCGCGGTTCATTCGCAATACAGAAGCACCGAACAAGAAACATATAACCTCGAGTACCAGACTGCCAATCAATCCGCCAAGCAACTTCTGCCCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCg < 2:1151470/139‑1 (MQ=255) aacaacAGCGCGCGGTTCATTCGCGATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCgg > 1:712109/1‑139 (MQ=255) acaGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCt < 2:868822/139‑1 (MQ=255) caGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCt > 2:178875/1‑138 (MQ=255) gcgcgGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGTTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGAc < 2:676493/139‑1 (MQ=255) cgcgGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGAc > 1:91379/1‑138 (MQ=255) ttCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGc < 2:1177160/139‑1 (MQ=255) ttCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGc < 1:1204239/139‑1 (MQ=255) cATAAGCCCCAAACAAAAAACAGAAACCCACGGGTACAAGACTGACAATCAACCCGCCAATCAACATCTGCCCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAaca < 2:1000246/138‑1 (MQ=255) aGCACCGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCAt < 1:801245/138‑1 (MQ=255) ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 2:367140/1‑139 (MQ=255) ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 1:1000246/1‑139 (MQ=255) ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 1:221811/1‑139 (MQ=255) ccGAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGc > 1:386341/1‑139 (MQ=255) gAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGcc > 2:806791/1‑138 (MQ=255) gAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGcc > 2:862357/1‑138 (MQ=255) gAACAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg < 1:1052439/139‑1 (MQ=255) aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATc < 2:390819/69‑1 (MQ=255) aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATc > 1:390819/1‑69 (MQ=255) aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGcc < 1:904422/80‑1 (MQ=255) aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGcc > 2:904422/1‑80 (MQ=255) aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg > 1:1186173/1‑138 (MQ=255) aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg > 2:75293/1‑138 (MQ=255) aaCAAGAAACAGATAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGCCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCg > 1:414061/1‑138 (MQ=255) aCAAGAAACAGATAACCACGGTTACCAGACTGACAATCAATCCGGCAATCAACATCGGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGaa < 1:862357/139‑1 (MQ=255) aCAAGAAACAAACAACCCCGGGAACAGGCCGGACAAAAAACCCGCAAACCAACATCGGCCCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGaa < 2:414061/139‑1 (MQ=255) gATAACCACGGGTACCAGACTGAAAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCAcc < 1:367140/139‑1 (MQ=255) aTAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGc > 1:971533/1‑67 (MQ=255) aTAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGc < 2:971533/67‑1 (MQ=255) aTAACCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTAACGGCGCTCAGCCCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCa > 2:1146900/1‑139 (MQ=255) aCCACGGTTCCCAGACTGACAATAAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGc < 2:836962/139‑1 (MQ=255) aCCACGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGc > 1:836962/1‑139 (MQ=255) cGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCaa < 2:893615/93‑1 (MQ=255) cGGGTACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCaa > 1:893615/1‑93 (MQ=255) | GGATGTTACTGCGAGCTGTATCACTGATGATCTCCATTGCCGGCGCGCAGGTACGTGCGCCCATCATTGCGCCGAACAACAGCGCGCGGTTCATTCGCAATACATAAGCACCGAACAAGAAACAGATAACCACGGGCACCAGACTGACAATCAATCCGGCAATCAACATCTGACCGCCAATCGCGCCCAGGCCGTTATTAATACCGCTACCGGCGCTCAGACCAACGCCTGCCATAAACACCATCAAGCCGAACTCTTTCACCATGC > NZ_CP009273/883685‑883951 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |