| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,049,216 | A→G | S807P (TCG→CCG) | torS ← | TMAO reductase system sensor histidine kinase/response regulator TorS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,049,216 | 0 | A | G | 100.0% | 144.2 / NA | 41 | S807P (TCG→CCG) | torS | TMAO reductase system sensor histidine kinase/response regulator TorS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (20/21); total (20/21) | |||||||||||
CGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATG > NZ_CP009273/1049093‑1049348 | cgcgGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTTTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGAc > 1:145403/1‑139 (MQ=255)cgcgGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGAc > 1:335430/1‑139 (MQ=255) gcgGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACt < 1:1126036/139‑1 (MQ=255) gggCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 2:829893/139‑1 (MQ=255) gggCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 1:281471/139‑1 (MQ=255) gggCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 1:1262034/139‑1 (MQ=255) gCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTTTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCa < 2:145403/139‑1 (MQ=255) aTCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGtt < 2:439432/107‑1 (MQ=255) aTCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGtt > 1:439432/1‑107 (MQ=255) gagaAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTgcgc < 2:511807/138‑1 (MQ=255) cGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAAc < 1:501991/139‑1 (MQ=255) ggCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGt > 2:501483/1‑122 (MQ=255) ggCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGt < 1:501483/122‑1 (MQ=255) cATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAg > 2:293479/1‑139 (MQ=255) gtAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCAc > 1:574387/1‑139 (MQ=255) tAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCAcg > 1:415481/1‑139 (MQ=255) ataCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 1:269390/139‑1 (MQ=255) ataCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 2:574387/139‑1 (MQ=255) ataCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 1:33279/139‑1 (MQ=255) taCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGAt < 2:871323/77‑1 (MQ=255) taCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGAt > 1:871323/1‑77 (MQ=255) taCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAcc > 2:240581/1‑139 (MQ=255) aCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg > 1:194842/1‑89 (MQ=255) aCCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTg < 2:194842/89‑1 (MQ=255) ctcCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCcgcg < 1:240581/138‑1 (MQ=255) cccATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATg < 1:1007941/139‑1 (MQ=255) cTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTgcgc > 2:1205901/1‑72 (MQ=255) cTGAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTgcgc < 1:1205901/72‑1 (MQ=255) gAGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTCGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGACCTGGTACg > 2:603308/1‑139 (MQ=255) aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 2:165265/99‑1 (MQ=255) aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc > 1:165265/1‑99 (MQ=255) aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGc > 2:353095/1‑139 (MQ=255) aGCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGc > 2:878766/1‑139 (MQ=255) gCATCTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTGAAGCGGCACCGGATTAGGGATAATCCCGCGGAATAATGAAGTGGCACGCt > 2:960743/1‑139 (MQ=255) cTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAg > 1:327825/1‑79 (MQ=255) cTTCATTGAGTTGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAg < 2:327825/79‑1 (MQ=255) ttGCGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCg > 2:1059702/1‑139 (MQ=255) cGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc > 2:1214377/1‑81 (MQ=255) cGATACATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCAc < 1:1214377/81‑1 (MQ=255) cATCCAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGa > 1:1244601/1‑138 (MQ=255) cAGCGGTTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGAGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATg < 2:440565/138‑1 (MQ=255) | CGCGGGCAATGTCGATTTCATCGAGAAGCGGCAGGGCATGTTGTGTAAATAATACCAGCCATTCGTGGATCTTCTCCGTCCCCATTAACTGAGCATCTTCATTGAGTTGCGATACATCCAGCGATTGATCATTATTGACTTGCAGTTGGAGATAGTGCGCCAGTAACTGACCGAGCACTTCACGCGGCACCGGTTTAGGGATAATCCCGCGGAATAATGAACTGGTACGCTGGCGCAGCGTTTCGTCAATGACATG > NZ_CP009273/1049093‑1049348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |