| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,497,341 | (C)5→4 | coding (624/2496 nt) | ptsP ← | phosphoenolpyruvate‑‑protein phosphotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,497,337 | 0 | C | . | 100.0% | 137.4 / NA | 31 | coding (628/2496 nt) | ptsP | phosphoenolpyruvate‑‑protein phosphotransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (15/16); total (15/16) | |||||||||||
GGCTTCAGTTCCGGCCAGGTGATATGCAGCAACTGTTCGCTGATATCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCGCCCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCAATTGCTGGTTCAGTT > NZ_CP009273/2497201‑2497471 | ggCTTCAGTTCCGGCCAGGTGATATGCAGCAACTGTTCGCTGATATCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCGccc > 1:606328/1‑139 (MQ=255) cTTCAGTTCCGGCCAGGTGATATGCAGCAACTGTTCGCTGATATCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCGcccca < 1:294231/139‑2 (MQ=255) gTTCCGGCCAGGTGATATGCAGCAACTGTTCGCTGATATCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGcccc < 1:98880/139‑1 (MQ=255) aCTGTTCGCTGATATCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGa < 2:606328/139‑1 (MQ=255) tatCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGa < 1:176993/127‑1 (MQ=255) tatCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGa > 2:176993/1‑127 (MQ=255) aaTGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAAtt > 2:398058/1‑139 (MQ=255) tGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATg > 2:433418/1‑99 (MQ=255) tGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATg < 1:433418/99‑1 (MQ=255) tGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATtca < 2:132314/139‑1 (MQ=255) tCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATtcat < 2:558593/138‑1 (MQ=255) gTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAAt > 1:111417/1‑138 (MQ=255) tGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCt > 1:13943/1‑138 (MQ=255) gcagaggcagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGccc < 1:742108/61‑1 (MQ=255) gcagaggcagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGccc > 2:742108/1‑61 (MQ=255) gcagaggcagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAg > 1:554251/1‑139 (MQ=255) aggcagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGaa > 1:430802/1‑113 (MQ=255) aggcagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGaa < 2:430802/113‑1 (MQ=255) ggcagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGatat > 2:440593/1‑88 (MQ=255) ggcagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTGCTGTCATCAGGCGACGGatat < 1:440593/88‑1 (MQ=255) cagaAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACTGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGtt < 1:791228/139‑1 (MQ=255) ggCGCAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCg < 2:111417/138‑1 (MQ=255) gcAAACCTGCTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGt < 1:75081/139‑1 (MQ=255) cTCCATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGtcacgctc < 1:398058/137‑1 (MQ=255) cATATTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCa < 2:13943/139‑1 (MQ=255) tatTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGtcacgc < 1:587219/130‑1 (MQ=255) tatTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGtcacgc > 2:587219/1‑130 (MQ=255) tatTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCAAt > 2:393975/1‑139 (MQ=255) tatTGCTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCAAt > 2:170339/1‑139 (MQ=255) cTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATtcat > 1:593791/1‑69 (MQ=255) cTGATGATCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATtcat < 2:593791/69‑1 (MQ=255) atgatCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCAATTGCTGGtt > 1:175983/1‑139 (MQ=255) atgatCGCCG‑CCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCAATTGCTGGtt > 1:823858/1‑139 (MQ=255) cgccg‑cCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCAATTGCTGGTTCAGtt > 2:391294/1‑139 (MQ=255) | GGCTTCAGTTCCGGCCAGGTGATATGCAGCAACTGTTCGCTGATATCGCGAATGTCGCTAACACGTTCGCGCAGATAATCGCTGGCAGAGGCAGAAAGTTTGGCGCAAACCTGCTCCATATTGCTGATGATCGCCGCCCCCAGCCCCTGATGCTGTTCTGTCATCAGGCGACGGATATTGCCTGCAAATTCATCATCCTGAATCAGCGACAAATGGGCGCTGAGGATAGTTTTGCTTTCGCCGTCACGCTCACGCAATTGCTGGTTCAGTT > NZ_CP009273/2497201‑2497471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |