New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	684757 =	56 (1.340)	3 (0.080)	3/222	3.8	5.5%	intergenic (‑324/+42)	BW25113_RS03405/lnt	IS5‑like element IS5 family transposase/apolipoprotein N‑acyltransferase
	?	NZ_CP009273	684788 =	51 (1.300)					intergenic (‑355/+11)	BW25113_RS03405/lnt	IS5‑like element IS5 family transposase/apolipoprotein N‑acyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACACCATACGCACGTACCGGCAACTGGCCGCTGTGGGTGCTGACGGCATTGTTTGGTTTTGCTGCTGTGTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/684897‑684757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacgATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGTGAGTCCGGTGGTCGGCGTCACGTTA  >  NZ_CP009273/684788‑684922                                                                                                                                                                                                                                                                                      ACACCATACGCACGTACCGGCAACTGGCCGCTGTGGGTGCTGACGGCATTGTTTGGTTTTGCTGCTGTGTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCA                                                                                                                                           <  2:16334/139‑1             CGTACCGGCAACTGGCCGCTGTGGGTGCTGACGGCATTGTTTGGTTTTGCTGCTGTGTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGATAAGAAGG                                                                                                                                >  1:680740/1‑138                                                        GTTTTGCTGCTGTGTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAA                                                                                     <  2:680740/138‑1                                                                         ATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTC                                                                    <  2:442803/138‑1                                                                                                                                          CACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGTGAGTCCGGTGGTCGGCGTCACGTTA  <  1:16334/139‑1                                                                                                                                                                                                                                                                                      ACACCATACGCACGTACCGGCAACTGGCCGCTGTGGGTGCTGACGGCATTGTTTGGTTTTGCTGCTGTGTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/684897‑684757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacgATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTTGCCGGTACGTGCGTATGGTGTGAGTCCGGTGGTCGGCGTCACGTTA  >  NZ_CP009273/684788‑684922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.