| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 362,870 | G→T | Q9H (CAG→CAT) | mhpA → | bifunctional 3‑(3‑hydroxy‑phenyl)propionate/3‑hydroxycinnamic acid hydroxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 362,870 | 0 | G | T | 100.0% | 170.8 / NA | 44 | Q9H (CAG→CAT) | mhpA | bifunctional 3‑(3‑hydroxy‑phenyl)propionate/3‑hydroxycinnamic acid hydroxylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (25/19); total (25/19) | |||||||||||
CCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTCGATAAGTTGATCGACTACCCG > NZ_CP009273/362739‑363005 | ccTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCctgctg > 1:790017/1‑139 (MQ=255) aGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCa < 2:458411/137‑1 (MQ=255) aGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCa > 1:291490/1‑137 (MQ=255) aGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCa > 1:368468/1‑137 (MQ=255) aGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCa > 1:850230/1‑137 (MQ=255) aGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCa > 1:614896/1‑137 (MQ=255) cgcACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCctgct > 2:74108/1‑127 (MQ=255) cgcACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCctgct < 1:74108/127‑1 (MQ=255) acaATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGtt > 2:19258/1‑139 (MQ=255) acaATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGtt > 2:765686/1‑139 (MQ=255) acaATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGtt < 2:614896/139‑1 (MQ=255) caATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTc < 2:291490/139‑1 (MQ=255) aaaaTCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTgg < 2:358026/139‑1 (MQ=255) tttACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGc < 1:19258/139‑1 (MQ=255) aTGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTg < 2:850230/139‑1 (MQ=255) tACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCg > 2:577349/1‑138 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCctgct > 1:230837/1‑73 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCctgct < 2:230837/73‑1 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCg < 1:716331/86‑1 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCg > 2:716331/1‑86 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGc > 1:751790/1‑108 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGc < 2:751790/108‑1 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTAt > 1:562959/1‑139 (MQ=255) tgCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTAt > 2:273515/1‑139 (MQ=255) tgcgcAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCctgct > 1:386096/2‑71 (MQ=255) tgcgcAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCctgct < 2:386096/70‑1 (MQ=255) gcAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGGCATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCg < 2:220839/96‑1 (MQ=255) gcAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCg > 1:220839/1‑96 (MQ=255) gcAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCgg > 2:496960/1‑139 (MQ=255) gcAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCgg > 1:97575/1‑139 (MQ=255) gcAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCgg < 1:496960/139‑1 (MQ=255) tGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCa < 1:765686/138‑1 (MQ=255) cTGAAATGGCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCtggtggtg > 2:94286/1‑137 (MQ=255) gCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTc > 2:552715/1‑138 (MQ=255) gCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTc > 1:3852/1‑138 (MQ=255) gCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTc > 1:285210/1‑138 (MQ=255) gCAATACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTCg < 1:712950/139‑1 (MQ=255) aTACAACACCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTCGATa < 1:823103/139‑1 (MQ=255) aacaCCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTCGATAAGtt < 2:3852/139‑1 (MQ=255) acCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTgatgat > 1:736624/1‑76 (MQ=255) acCCTGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTgatgat < 2:736624/76‑1 (MQ=255) tGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGatgatg > 2:491523/1‑73 (MQ=255) tGACATCCATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGatgatg < 1:491523/73‑1 (MQ=255) ccATCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTCGATAAGTTGATCGACTACCcg > 1:136264/1‑139 (MQ=255) | CCTATACTGAGCGCACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAATGGCAATACAACACCCTGACATCCAGCCTGCTGTTAACCATAGCGTTCAGGTGGCGATCGCTGGTGCCGGCCCGGTTGGGCTGATGATGGCGAACTATCTCGGCCAGATGGGCATTGACGTGCTGGTGGTGGAGAAACTCGATAAGTTGATCGACTACCCG > NZ_CP009273/362739‑363005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |