| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,100,664 | A→T | D83V (GAT→GTT) | csgC → | curli assembly chaperone CsgC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,100,664 | 0 | A | T | 100.0% | 93.7 / NA | 24 | D83V (GAT→GTT) | csgC | curli assembly chaperone CsgC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (11/13); total (11/13) | |||||||||||
AGTACAAATATTGTCCCTGCGCGAAGGCAGTTCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATG > NZ_CP009273/1100536‑1100790 | agTACAAATATTGTCCCTGCGCGAAGGCAGTTCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGaa > 1:362442/1‑138 (MQ=255) gTCCCTGCGCGAAGGCAGTTCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACt > 2:234470/1‑139 (MQ=255) gTCCCTGCGCGAAGGCAGTTCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACt > 1:513145/1‑139 (MQ=255) ccTGCGCGAAGGCAGTTCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGt < 1:323340/138‑1 (MQ=255) cgcgAAGGCAGTTCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTg < 2:179165/139‑1 (MQ=255) ttCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCa < 1:617617/139‑1 (MQ=255) ggCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCa < 1:423620/139‑1 (MQ=255) gACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCAGTTATCacaa < 2:730729/139‑1 (MQ=255) aCGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCacaac < 2:15026/139‑1 (MQ=255) aGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATg > 1:419725/1‑139 (MQ=255) cAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGgc > 1:253973/1‑139 (MQ=255) aaaaGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGgccgcc < 1:188492/139‑1 (MQ=255) ttGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATc < 1:851433/139‑1 (MQ=255) tGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCa > 1:428547/1‑84 (MQ=255) tGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCa < 2:428547/84‑1 (MQ=255) tGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATc > 2:305640/1‑138 (MQ=255) tGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATca < 1:6566/86‑1 (MQ=255) tGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATca > 2:6566/1‑86 (MQ=255) tGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGgccgcc < 1:659633/100‑1 (MQ=255) tGACGAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGgccgcc > 2:659633/1‑100 (MQ=255) gAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGa < 1:487281/139‑1 (MQ=255) gAAGTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGa < 1:234470/139‑1 (MQ=255) gTTGAGTTTAAATATTTCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATg > 1:116115/1‑138 (MQ=255) tttCCCCGGACGTTCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATg > 1:462518/1‑139 (MQ=255) | AGTACAAATATTGTCCCTGCGCGAAGGCAGTTCAGGGCAAAGTCAGACGAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATG > NZ_CP009273/1100536‑1100790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |