| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,134,272 | A→G | T147A (ACC→GCC) | flgK → | flagellar hook‑associated protein FlgK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,134,272 | 0 | A | G | 100.0% | 95.9 / NA | 27 | T147A (ACC→GCC) | flgK | flagellar hook‑associated protein FlgK |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (12/15); total (12/15) | |||||||||||
GTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCACCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCG > NZ_CP009273/1134138‑1134398 | gTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGa > 1:112701/1‑139 (MQ=255) tCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATc > 1:472302/1‑139 (MQ=255) cAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGa < 2:334745/139‑1 (MQ=255) cAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGa < 1:715316/139‑1 (MQ=255) aTGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACa < 1:739812/139‑1 (MQ=255) cAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACaaa < 1:533700/138‑1 (MQ=255) ggATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAg > 2:295580/1‑139 (MQ=255) cttcACCAGCGTGAAAACGCTGGTAAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATGGGGAAATCAGAAGGATTGGTAAACAGGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAat < 2:757432/139‑1 (MQ=255) gCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTAAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGAt < 2:472302/139‑1 (MQ=255) tGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAgg > 1:548318/1‑139 (MQ=255) aaaCGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGc < 2:384104/139‑1 (MQ=255) aGTAACGGGGAAGACCGGGCAGCGCGGCAGGCGCGGATTGGGAAAGCAGAAGGATTGGTAAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTgatc < 1:387976/139‑1 (MQ=255) aGTAACCCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGGCAAACAGGTCAATATCGCGATAGGTGCCAGCGTTgatc < 1:349631/139‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGGCAAACAGGTCAATATCGCGATAGGTGCCAGCGTTgat > 2:349631/1‑136 (MQ=255) aCGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTgat > 1:755975/1‑134 (MQ=255) cgcgGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTgatcagat > 1:109638/1‑138 (MQ=255) cgcgGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGAAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTgatc < 2:755975/134‑1 (MQ=255) cgGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATcaa > 1:445971/1‑139 (MQ=255) ccGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACg > 2:551371/1‑139 (MQ=255) gCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCt > 2:738502/1‑138 (MQ=255) cAGAAGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCTAAACAAATTGCCAGCCTGAACGATCAAAt > 2:398578/1‑139 (MQ=255) aGGATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTcg < 1:122366/139‑1 (MQ=255) gATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTcgcg < 2:112701/139‑1 (MQ=255) gATTGGTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTcgcg < 1:824217/139‑1 (MQ=255) gTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGa > 2:597298/1‑38 (MQ=255) gTGAATCAGTTTAAAACCGCCGATCAATATCTGCGCGa < 1:597298/38‑1 (MQ=255) aGTTTAAAACCGCCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCg < 2:445971/138‑1 (MQ=255) | GTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAATCAGTTTAAAACCACCGATCAATATCTGCGCGACCAGGACAAACAGGTCAATATCGCGATAGGTGCCAGCGTTGATCAGATCAACAACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCG > NZ_CP009273/1134138‑1134398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |