| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,199,864 | G→A | pseudogene (239/246 nt) pseudogene (8/1137 nt) |
BW25113_RS26105 → BW25113_RS05965 → |
helix‑turn‑helix domain‑containing protein terminase large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,199,864 | 0 | G | A | 100.0% | 133.5 / NA | 34 | pseudogene (239/246 nt) pseudogene (8/1137 nt) | BW25113_RS26105 BW25113_RS05965 | helix‑turn‑helix domain‑containing protein terminase large subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/22); total (12/22) | |||||||||||
GAAGGTGTGTGCTGGCCATCAATTGAAACCATTGCCCGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGGTTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACGCCAGCCACTGATGTGGGCCATTACCACCGCC > NZ_CP009273/1199731‑1199988 | gAAGGTGTGTGCTGGCCATCAATTGAAACCATTGCCCGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCTTCGCCAGGGTGATGATtcat < 2:222361/139‑1 (MQ=255)gAAGGTGTGTGCTGGCCATCAATTGAAACCATTGCCCGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATtcat < 1:115385/139‑1 (MQ=255) gCCATCAATTGAAACCATTGCCCGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACtgtg < 2:510607/137‑1 (MQ=255) gCCATCAATTGAAACCATTGCCCGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGcc > 1:42491/1‑139 (MQ=255) tCAATTGAAACCATTGCCCGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGTCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCgtgg < 2:736471/139‑1 (MQ=255) ccGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAg < 1:389290/139‑1 (MQ=255) ccGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAg < 1:623724/139‑1 (MQ=255) gTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCa < 1:353459/139‑1 (MQ=255) cgcgGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGAt < 1:426946/139‑1 (MQ=255) cgcgGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGAt < 2:42491/139‑1 (MQ=255) cgcgGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGAt < 2:319889/139‑1 (MQ=255) ccGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAg > 2:668069/1‑113 (MQ=255) ccGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAg < 1:668069/113‑1 (MQ=255) cGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTa > 2:104465/1‑132 (MQ=255) cGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTa < 1:104465/132‑1 (MQ=255) tCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGAt < 2:529618/139‑1 (MQ=255) cGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTAc < 1:790807/139‑1 (MQ=255) ggCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGAtt > 1:413853/1‑54 (MQ=255) ggCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGAtt < 2:413853/54‑1 (MQ=255) aaGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACtgtg < 2:43839/57‑1 (MQ=255) aaGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACtgtg > 1:43839/1‑57 (MQ=255) aaGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACgccagc > 1:382370/1‑138 (MQ=255) aaGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACgccagc > 2:21163/1‑138 (MQ=255) gTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACgccagcca < 1:674086/133‑1 (MQ=255) gTTAACGCGTAAGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACgccagcca > 2:674086/1‑133 (MQ=255) aGGCGCGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACGCCAGCCACTGATGTGGGCCATTac > 1:637860/1‑139 (MQ=255) gcgcGTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACGCCAGCCACTGATGTGGGCCATTacca < 1:351640/139‑1 (MQ=255) cgTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGa > 2:274847/1‑44 (MQ=255) cgTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGa < 1:274847/44‑1 (MQ=255) cgTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATg > 2:504454/1‑87 (MQ=255) cgTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATg < 1:504454/87‑1 (MQ=255) cgTCGCCAGGGTGATGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACGCCAGCCACTGATGTGGGCCATTACCAccg < 1:471025/139‑1 (MQ=255) aTGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACGCCAGCCACTGATGTGGGCCATTACCAccgcc > 2:756118/1‑128 (MQ=255) aTGATTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACGCCAGCCACTGATGTGGGCCATTACCAccgcc < 1:756118/128‑1 (MQ=255) | GAAGGTGTGTGCTGGCCATCAATTGAAACCATTGCCCGTCAGATTGGCGCGGGGATGAGTACCGTCAGAACGGCTATCGCACGGCTGGAAGCAGAAGGCTGGTTAACGCGTAAGGCGCGTCGCCAGGGTGATGGTTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACAGATGCGCTTTACACCACGATGCTTACCGGGATGGGGGCGCGACGCCAGCCACTGATGTGGGCCATTACCACCGCC > NZ_CP009273/1199731‑1199988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |