| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,781,609 | T→C | pseudogene (1854/2253 nt) | BW25113_RS26005 → | alpha‑amylase family glycosyl hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,781,609 | 0 | T | C | 100.0% | 80.3 / NA | 23 | pseudogene (1854/2253 nt) | BW25113_RS26005 | alpha‑amylase family glycosyl hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (11/12); total (11/12) | |||||||||||
TGGCATATATAGCCGCTCTGCCGTTCAGCAGGCCTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGTTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATT > NZ_CP009273/2781476‑2781733 | tGGCATATATAGCCGCTCTGCCGTTCAGCAGGCCTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGctc < 2:522199/139‑1 (MQ=255) ccGCTCTGCCGTTCAGCAGGCCTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATcag > 2:826109/1‑137 (MQ=255) cGCTCTGCCGTTCAGCAGGACTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATcagcag < 1:826109/139‑1 (MQ=255) ctctGCCGTTCAGCAGGCCTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGct > 1:810303/1‑139 (MQ=255) gCCTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCAc < 2:61112/139‑1 (MQ=255) cTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAAt < 1:224299/128‑1 (MQ=255) cTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAAt > 2:224299/1‑128 (MQ=255) tAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCAt < 1:132704/138‑1 (MQ=255) tAGTTGTCTAGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGCGTCCACGCGTGTCGGCGGTGAGACGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCACTACAATGAATTCCACGCAt < 2:34421/138‑1 (MQ=255) aaCGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAgcgc < 1:629651/138‑1 (MQ=255) atgGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTa > 1:711969/1‑138 (MQ=255) aCGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTc < 2:711969/139‑1 (MQ=255) cgcgTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTAc > 1:321881/1‑43 (MQ=255) cgcgTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTAc < 2:321881/43‑1 (MQ=255) gcgTGTCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTg < 1:376950/139‑1 (MQ=255) tgtCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAg > 1:600108/1‑86 (MQ=255) tgtCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAg < 2:600108/86‑1 (MQ=255) tCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACa < 1:196102/54‑1 (MQ=255) tCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACa > 2:196102/1‑54 (MQ=255) tCGGCGGTGAGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCtt > 2:629174/1‑139 (MQ=255) agggaggTGAGGAGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGGGCATTTGAGGGTGTATCTGCAAAAAAAAAAGAACTGGCCtt > 2:285734/6‑139 (MQ=255) aGGCGTAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTgg > 2:100799/1‑139 (MQ=255) tAGCTTAATAAAGGCTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGAtt > 1:773544/1‑139 (MQ=255) | TGGCATATATAGCCGCTCTGCCGTTCAGCAGGCCTTTAGTTTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCCACGCGTGTCGGCGGTGAGGCGTAGCTTAATAAAGGTTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATT > NZ_CP009273/2781476‑2781733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |