| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,058,644 | Δ1 bp | coding (483/1404 nt) | yihO ← | MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,058,644 | 0 | A | . | 100.0% | 115.9 / NA | 27 | coding (483/1404 nt) | yihO | MFS transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (15/12); total (15/12) | |||||||||||
CAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATC > NZ_CP009273/4058515‑4058776 | caGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGc > 2:333777/1‑139 (MQ=255) catcatAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCgg > 2:487269/1‑138 (MQ=255) catcatAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCgg > 2:203984/1‑138 (MQ=255) tGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTgg > 1:109966/1‑139 (MQ=255) caGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGc > 2:32650/1‑139 (MQ=255) cGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTc > 2:49790/1‑109 (MQ=255) cGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTc < 1:49790/109‑1 (MQ=255) gAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCAt < 1:424220/138‑1 (MQ=255) aGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATAc > 2:375752/1‑139 (MQ=255) aGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAg < 1:163643/138‑1 (MQ=255) gAAAAAAGCGACTGCATCGGAATAAACGCCACGGTCCAAATCAATAGCACTATGGTTGC‑CCACCATGGCGGTAAGGCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 2:65911/139‑1 (MQ=255) aGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcat < 1:127082/139‑1 (MQ=255) cGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatca < 1:203984/139‑1 (MQ=255) aCGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGa < 1:26140/124‑1 (MQ=255) aCGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGa > 2:26140/1‑124 (MQ=255) cGCCACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 2:457274/139‑1 (MQ=255) cACGGTACAAATCAATAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAAca > 2:254188/1‑139 (MQ=255) tAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCgg < 2:129680/74‑1 (MQ=255) tAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCgg > 1:129680/1‑74 (MQ=255) tAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa > 2:113951/1‑121 (MQ=255) tAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:113951/121‑1 (MQ=255) tAGCCCTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCgg > 2:63285/1‑139 (MQ=255) cTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatca > 2:101504/1‑98 (MQ=255) cTATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatca < 1:101504/98‑1 (MQ=255) tATGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGa < 2:234112/99‑1 (MQ=255) tATGGCTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGCAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGa > 1:234112/1‑99 (MQ=255) tGGTTGC‑CCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAAtc > 1:82505/1‑139 (MQ=255) | CAGCATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATC > NZ_CP009273/4058515‑4058776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |